Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi598g00030 ATGGGAACAGATATTCCGACGAATTACAGTTACATGACAGCAGGGATTACAAACGACGATTCCTCTTCCGCTTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCCCTACGGCTTCTTCCCAAACCCGACGCCTTCTCCTTTCTTGCGCTTCTGACAATTCCGACGATCTCATCCGTCAATTAGTCCTCGATCTCAACTCTTGTTCCATTGATGAACAAAAACAAGCCACCATGGAGATCAGATTACTCGCCAAGAACAAGCCAGAAAATCGCCTCAAAATCGCCAAAGCCGGCGCTATCACTCCCTTGATTTCCCTCTTATCCTCGCCGGACCTTCAGCTTCAAGAATACGGTGTAACGGCGATTTTGAATCTCTCCCTCTGCGACGAGAACAAAGACCTAATTGCTTCGTATGGAGCAATTAGGCCTCTGGTTCGAGCACTGAAAACAGGGACTCCAACTGCCAAGGAGAATGCATCGTGTGCTTTGCTTCGTCTCTCGCATACGGAAGAGAACAAGGTTGCAATTGGAAGGGCGGGAGCGATTCCTCTACTGGTGAACCTTCTAGAAAGCGGCGGTTTTCGCGGGAAGAAGGACGCGTCGACGGCGCTGTATTCGCTGTGTTCGGTGAAGGAGAACAAGATGAGGGCGGTGAATGCGGGGATAATGAAGCCGTTGGTGGAATTGATGGCGGATTTAGGGTCGAACATGGTGGATAAGTCGGCGTATGTTTTGAGTGTGCTGGTGACGGTGGGAGAGGGGAAGAGGGCGTTGGTGGAGGAAGGAGGGATTCCTGTGTTGGTGGAGATTGTGGAGGTTGGGACGCAGAGACAGAAGGAAATTGCGGTGGTTATTTTGTTGCAGATTTGTGAGGAGAATGTGGCTTACCGTACTATGGTGTCTCGAGAAGGAGCCATTCCTCCCTTGATTGCTTTGTCGCAGACCGGCACCAATCGCGCCAAGCAAAAGGCGGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCGGCAACGGTGCTGGCCGTAGCTCAGAAGTGTCAGCATAA 1050 0.5105 MGTDIPTNYSYMTAGITNDDSSSAFSDCNSDRSGEFPTASSQTRRLLLSCASDNSDDLIRQLVLDLNSCSIDEQKQATMEIRLLAKNKPENRLKIAKAGAITPLISLLSSPDLQLQEYGVTAILNLSLCDENKDLIASYGAIRPLVRALKTGTPTAKENASCALLRLSHTEENKVAIGRAGAIPLLVNLLESGGFRGKKDASTALYSLCSVKENKMRAVNAGIMKPLVELMADLGSNMVDKSAYVLSVLVTVGEGKRALVEEGGIPVLVEIVEVGTQRQKEIAVVILLQICEENVAYRTMVSREGAIPPLIALSQTGTNRAKQKAETLIELLRQPRSGNGAGRSSEVSA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi598g00030 349 PANTHER U BOX DOMAIN-CONTAINING 58 333 - -
Sebi598g00030 349 Gene3D - 198 336 IPR011989 -
Sebi598g00030 349 Gene3D - 22 195 IPR011989 -
Sebi598g00030 349 SUPERFAMILY ARM repeat 56 329 IPR016024 -
Sebi598g00030 349 FunFam RING-type E3 ubiquitin transferase 47 338 - -
Sebi598g00030 349 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 141 IPR000225 GO:0005515
Sebi598g00030 349 SMART arm_5 211 251 IPR000225 GO:0005515
Sebi598g00030 349 SMART arm_5 170 210 IPR000225 GO:0005515
Sebi598g00030 349 SMART arm_5 252 292 IPR000225 GO:0005515
Sebi598g00030 349 SMART arm_5 88 128 IPR000225 GO:0005515
Sebi598g00030 349 SMART arm_5 129 169 IPR000225 GO:0005515
Sebi598g00030 349 Pfam Armadillo/beta-catenin-like repeat 89 127 IPR000225 GO:0005515
Sebi598g00030 349 Pfam Armadillo/beta-catenin-like repeat 130 168 IPR000225 GO:0005515
Sebi598g00030 349 Pfam Armadillo/beta-catenin-like repeat 171 210 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi598g00030 Sebi-Chr598 499117 501810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi598g00030 40 343 U-box Gene Family AT2G23140 48.684 1.89e-83 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi598g00030 - - mnt:21388741 548.895