Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi598g00028 ATGGAAACCCTTGGAGCCTTCCCTGATGGAGAATGGGAATGCTTTAGCAGAATGTTTGCAATTGAAGAGCATGATGACTCACAACAACTACTTCATCAAAGCTCTCTTCTGCTTGGTGAAGATGATGGCAACATTGCAATACAATCCATGTTTTGCTCCATCCCTGAAGCTGGAGGAGATAAGAGTCACACAAACTACTATTTCAATTATCCTGATCTTGTCCTAGCAAATGATCCCTGCACATCCATTGGTTTTTGCATGATGGATAAGAAAAAGCCAGAGTCTTTCGTAATGGAAGAGAATGTTAACTTGAATGAAAATGAGAAAAGTGACAGATTATCAGAAATTTCTGATCACAGTCAAGTAGAACCTATTGTTTTCCCCGCCAATAAGTTAAAGCTCAAAAGGATGCTTCATGTGCCAGAATTGGAAGTGCATGTAGTAGAACATAAAATAAACTCATGTGGGAATAGTAAGAAAAAGCCTCGTGCTTCAAAAGATGTGCAAAGATGCATTAAGAATGCACAGTCCAAAAAGAACCAGAAGGGTGACAGAGTTGGGAACGAGGCAGAAGAAACCAATGCAGGTTCAGATGGACATAGCTCTAGTAGTTATATCTCAGAGGAGCATAATACTTCTCAGGAAAATAATGGAGGTGCTACTTCAGCATTTAAATCACCTGTGGCTCTCAACTTAAATGGGAAAAAAAGAGTCAGCAGGGGATCAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGGGAGAGAATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCCAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTTAAATTTTTGCAGCTTCAGATCAAGCTTCTAAGCTCTGATGATTTGTGGATGTATGCTCCGATTGCTTATAATGGACTTGACATTGGACTCAACCGCAGCGGGAAGATTTCTCCACCTTGA 984 0.4035 METLGAFPDGEWECFSRMFAIEEHDDSQQLLHQSSLLLGEDDGNIAIQSMFCSIPEAGGDKSHTNYYFNYPDLVLANDPCTSIGFCMMDKKKPESFVMEENVNLNENEKSDRLSEISDHSQVEPIVFPANKLKLKRMLHVPELEVHVVEHKINSCGNSKKKPRASKDVQRCIKNAQSKKNQKGDRVGNEAEETNAGSDGHSSSSYISEEHNTSQENNGGATSAFKSPVALNLNGKKRVSRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGLNRSGKISPP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi598g00028 327 FunFam Basic helix-loop-helix transcription factor 243 300 - -
Sebi598g00028 327 MobiDBLite consensus disorder prediction 194 224 - -
Sebi598g00028 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 314 - -
Sebi598g00028 327 CDD bHLH_AtIND_like 243 305 - -
Sebi598g00028 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 291 IPR011598 GO:0046983
Sebi598g00028 327 SMART finulus 248 297 IPR011598 GO:0046983
Sebi598g00028 327 Pfam Helix-loop-helix DNA-binding domain 252 292 IPR011598 GO:0046983
Sebi598g00028 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 307 IPR036638 GO:0046983
Sebi598g00028 327 MobiDBLite consensus disorder prediction 177 191 - -
Sebi598g00028 327 Gene3D - 244 300 IPR036638 GO:0046983
Sebi598g00028 327 MobiDBLite consensus disorder prediction 174 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi598g00028 Sebi-Chr598 474975 476671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi598g00028 200 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 76.423 2.37e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi598g00028 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi598g00028 - - mtr:25489956 337.806