Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi598g00006 ATGAGAGGAAGAGTAAAGCACCACCTGAGACTGGCTTCTACGGTGCTCACCGACGCAACCCTTGTGATTGTGAAAACAATAGAAAAAACAAAGAAGGATGAGTGGTCCGTCACGAGAAGTGGAATCAAAGAAGAGGAGAGGGAAGAAGAGGGTAACCGGCTGCTAGAAGATGAATCGGAGGAAGAAGAGGTGGCATATGAAGCGGGAGAGAAGATCCTGGTCGTAGATTTTGAGTTTGACTCCGTGGACGATTCTACCGTGCCTCCTTTCTCATGGAAGAAGCTATGGGTCTTCACTGGGCCTGGGTTCTTGATGAGCATAGCTTTCTTGGATCCGGGGAATCTGGAAGGGGATCTCCAAGCTGGAGCCATCGCCGGTTACTCCCTCCTCTGGCTTTTGATGTGGGCCACCTTCATGGGCCTCTTGATACAGCTTCTGTCTGCCAGGGTTGGTGTCGCTACAGGTCGCCACCTCGCTGAGCTATGTAGGGATGAGTATCCCAATTGGGCTCGCCTTGTGCTTTGGTTCATGGCTGAGCTCGCTTTGATTGGTGCTGATATTCAAGAGGTCATTGGTAGTGCCATCGCCATTCAAATTCTTAGCCGCGGACTCTTCCCCCTCTGGGTTGGTGTTCTAATTACTGCTTCCGATTGCTTTATGTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACCATGGGTCTTTCTTTTGCATGGATGTTTGGTGACGCACAACCTAGTGGAAAAGAGCTTTTGATGGGTATTTTGATTCCAAGACTCAGCTCAAAAACAATTCGTCAGGCTGTTGGCGTTGTTGGTTGTGTCATAATGCCTCACAATGTATTCCTGCATTCTGCTTTAGTGCAGTCGAGGAAGATTGATCCCAATAAGAAAGTTCGAGTACAAGAGGCTCTCAACTACTATTCAATTGAGTCGTCGGCTGCACTTTTAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTACGGTACAAAGCAGGCAAATAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAGTATGGAGGAGGACTCTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGACAGAGTAGCACCATCACTGGCACATATGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGTTGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGATCAGAAGCCTCGCTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCTATACAAATTCCCTTTGCGTTGATTCCCCTCCTCACGATGGTCTCCAAAGAGCAGATCATGGGGACCTTTAGGGTTGGGCCTATTCTTGAGGAATTGGGATAA 1455 0.4612 MRGRVKHHLRLASTVLTDATLVIVKTIEKTKKDEWSVTRSGIKEEEREEEGNRLLEDESEEEEVAYEAGEKILVVDFEFDSVDDSTVPPFSWKKLWVFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGLFPLWVGVLITASDCFMFLFLENYGVRKLEAAFAVLIATMGLSFAWMFGDAQPSGKELLMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPNKKVRVQEALNYYSIESSAALLVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDVLNEWLNVLQSIQIPFALIPLLTMVSKEQIMGTFRVGPILEELG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi598g00006 484 NCBIfam Nramp family divalent metal transporter 100 469 - -
Sebi598g00006 484 Pfam Natural resistance-associated macrophage protein 116 477 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 Hamap Divalent metal cation transporter MntH [mntH]. 81 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 413 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 447 466 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 229 250 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 278 301 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 174 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 204 223 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PRINTS Natural resistance-associated macrophage protein signature 385 404 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 81 481 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi598g00006 484 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 93 471 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi598g00006 Sebi-Chr598 89133 92850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi598g00006 44 484 Inorganic Solute Cotransporters AT1G47240 81.938 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi598g00006 K21398 - gmx:100791117 777.704