LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi597g00008	ATGGAGAGGAATGGGATGAGCAATGATTACAGTTCAGAGGACGAAGGCACTGAGGGTTATAGGCGTGGAGGATACCATGCAGTTCGAGTTGGTGACACTTTCAAGAATGGCTGCTATGTCGTGCAGTCCAAGCTCGGTTGGGGTCATTTTTCCACTGTCTGGCTCGCTTGGGACACTCTCCATTCGCGTTATGTAGCCCTTAAAATTCAGAAGAGTGCGCAGCACTACACTGAAGCTGCGATGGATGAAATAAAGATTCTTAAACAAATTGCAGAGGGAGACCCTGATGACAAGAAATGTGTTGTGAAGCTTTTGGATTACTTTAAGCATTCGGGGCCTAATGGGCTGCATGTGTGTCTGGTTTTTGAATTTCTTGGTGACAATCTTCTCACCCTTGTCAAATACAGTGACTATCGTGGGGTTCCTCTCCCCATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTAGATTACTTGCACCGTGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAGATCCATACAAGGATCCTAGGAAATCAGGTGCTCCACTTATCCTTCCAACTACTGAGGATAAAGCTGTGTCTAATAATGAGACTACCAAGGACAATAAAATTTTGAATGGAGATCTGATGAAGAACCAGAAAAAGAAAATGCAGAGGAAGGCTAGGAAGGCAGCTCAAGGCTGTGTTGAGAAGGAAAGTCCAGAGGAAGCTGAGGAGGATTATAAAGAACCGGAGGAAGAAGATTGTATTAATGGTATGCAATCAAGTGTAGAATCTGTTGAAGATAAACTTAATACTTCATTGAGTGAAGGTGAATCAACAAAAACTGTTGAGAAGGATGTTTCACAAGGAAGTCATGGTCACAGGAGCCGTTCCAAGGGAAAGAAGTTGCTGGCGGCTGCTGATCTTAAGTGCAAGCTGGTTGATTTAGGTAGTGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAATACAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCGGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGGGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTAGGTGGCCGCTATTCCCGAGAGTTTTTCAATAGGCATGGTGACTTGAGGCACATTCGCAATTTGCGATTTTGGCCAATTAATAAGGTGCTGACGGAGAAGTATGATTTCAGTGATCAAGATGCAAATGACATGGCTGACTTCCTTGTTCCAATACTTGATTTTGTCCCTGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGATCAGTGCAGGTCCTCGGACCCTTGAGCCCTCAATGACAATTATGCAACCGGATACCATCAATGAGGAATTGTCTGAAACGAGGAAGAGGGAAAAGGCTGAGCAAGAGTTACTGGAAGTTGGTGTGAGGAATATAGCCATTAATGGAACTCCTGAGTTACTCAAGGACTCCCAACCTCTAAAGTCATCGAAATAG	1623	0.4368	MERNGMSNDYSSEDEGTEGYRRGGYHAVRVGDTFKNGCYVVQSKLGWGHFSTVWLAWDTLHSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDYFKHSGPNGLHVCLVFEFLGDNLLTLVKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLIDPYKDPRKSGAPLILPTTEDKAVSNNETTKDNKILNGDLMKNQKKKMQRKARKAAQGCVEKESPEEAEEDYKEPEEEDCINGMQSSVESVEDKLNTSLSEGESTKTVEKDVSQGSHGHRSRSKGKKLLAAADLKCKLVDLGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGENYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRHGDLRHIRNLRFWPINKVLTEKYDFSDQDANDMADFLVPILDFVPEKRPTAAQCLSHPWISAGPRTLEPSMTIMQPDTINEELSETRKREKAEQELLEVGVRNIAINGTPELLKDSQPLKSSK	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi597g00008	540	SMART	serkin_6	39	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi597g00008	540	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
	Sebi597g00008	540	Gene3D	Phosphorylase Kinase; domain 1	15	122	-	-
	Sebi597g00008	540	ProSiteProfiles	Protein kinase domain profile.	39	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi597g00008	540	MobiDBLite	consensus disorder prediction	236	305	-	-
	Sebi597g00008	540	Gene3D	Transferase(Phosphotransferase) domain 1	123	478	-	-
	Sebi597g00008	540	MobiDBLite	consensus disorder prediction	264	284	-	-
	Sebi597g00008	540	CDD	STKc_SRPK	28	477	-	-
	Sebi597g00008	540	ProSitePatterns	Protein kinases ATP-binding region signature.	45	68	IPR017441	GO:0005524
	Sebi597g00008	540	FunFam	Serine/threonine-protein kinase SRPK-like protein	307	477	-	-
	Sebi597g00008	540	Pfam	Protein kinase domain	39	178	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi597g00008	540	Pfam	Protein kinase domain	309	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi597g00008	540	SUPERFAMILY	Protein kinase-like (PK-like)	34	493	IPR011009	-
	Sebi597g00008	540	MobiDBLite	consensus disorder prediction	285	299	-	-
	Sebi597g00008	540	FunFam	CMGC/SRPK protein kinase	25	124	-	-
	Sebi597g00008	540	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	10	499	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi597g00008	Sebi-Chr597	479823	483457	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi597g00008	2	526	EF-hand Containing Proteins	AT5G22840	68.785	0.0	716

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Sebi597g00008		Pkinase	6.8e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi597g00008	K08832		-	gmx:100790060	864.374