Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi596g00034 ATGTTCCCTGCAGTTATGTCCAATTCTACTACTTCTTTATCTGAAGAAGCCACAAGAATTCATCAGGACTTGGACTTGGGTAGATTAAATCACCTTGTCTCAAACATTTCTCCTCAGCCTCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAACCCAGACCCAGATGCTGAAGTGATAGCCTTATCCCCAAAGACCCTTTTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCATAACCTGCCTTGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAGAGCCTATGTTTGCCCTGAGCCTTCATGTGTTCACCACAACCCATCAAGGGCTTTAGGGGATCTTACAGGAATTAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTGTCAGCAAACCAATTAGTGACAAGAAACACAAACCCATTCGTCCAATCTCTCTTCCTTTTACCAACCCAACAACATACCTTCCAAAACCTCAATCCCTGGGACCCATCTCAACAAAACCCTAACCCTAACAACCTTGCTGCACCCCTTCACAACATCAAGCCTGAAGCTCAATCTCAAGTTCAAACCTTTCAGATCCCCAACAACCTCTCTGCTTCTCCTCCCCAATTTGTTCACCACTCACCCTTATTCCACGTGCGCACTCAACCCTCCTCCAATGCTGCTGCCACGTCAGCACACCTCTCAGCCACTGCACTGCTCCAGAAGGCAGCAACCGTTGGTGCGGCTGCCATCACAGGGCAACAGCAGCCAATGAGTCAGGTCGGCATGGGCGAGTTTGGATCGGTGAGTCAGCTTGACTCGGTGGTAGCTGATCATCAGTACGTGCTCAGCACCAAGAACGACGGTCTCACGAGGGACTTTCTAGGCCTTAATGGAGGCGCGGTGGACGTTAGCGTAAACGTCAAGGATATGCTAACATTCACGGGAAGCGTAGAGTACCATCAGAACACGCTGTTGAAGTCACAACAACAAGGTTTTGGATTCCTTGGGACAACCACTGCTCCTGAATCATGGGGGAATTGTTAG 1269 0.4712 MFPAVMSNSTTSLSEEATRIHQDLDLGRLNHLVSNISPQPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLVTRNTNPFVQSLFLLPTQQHTFQNLNPWDPSQQNPNPNNLAAPLHNIKPEAQSQVQTFQIPNNLSASPPQFVHHSPLFHVRTQPSSNAAATSAHLSATALLQKAATVGAAAITGQQQPMSQVGMGEFGSVSQLDSVVADHQYVLSTKNDGLTRDFLGLNGGAVDVSVNVKDMLTFTGSVEYHQNTLLKSQQQGFGFLGTTTAPESWGNC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi596g00034 422 Gene3D Classic Zinc Finger 53 122 - -
Sebi596g00034 422 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Sebi596g00034 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Sebi596g00034 422 Gene3D Classic Zinc Finger 143 208 - -
Sebi596g00034 422 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Sebi596g00034 422 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Sebi596g00034 422 MobiDBLite consensus disorder prediction 32 58 - -
Sebi596g00034 422 FunFam protein indeterminate-domain 12-like 53 121 - -
Sebi596g00034 422 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
Sebi596g00034 422 SMART c2h2final6 150 170 IPR013087 -
Sebi596g00034 422 SMART c2h2final6 74 96 IPR013087 -
Sebi596g00034 422 SMART c2h2final6 115 145 IPR013087 -
Sebi596g00034 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 390 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi596g00034 Sebi-Chr596 621565 624969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi596g00034 4 394 IDZ Gene Family AT4G02670 52.184 3.62e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi596g00034 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi596g00034 K25870 - gmx:100780056 557.37