Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi596g00010 ATGGAAGTAATTGGCCTCAAGGAGAAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTAGGACTGCCTGGGAATGGATCAGCCAAAGCCACTACTGAAGCAGCAGCAGCAAGGAAGAGAGGATTCTCTGAAACTGAGTCTGACTCTGAGAATGAAACCATAACCACTGTGGATTTGAAGCTTAACCTCTCCCCAAAGGAAGCAGCTTCTTCTGCTGCGGTGGCAGATCCACCTCCTAAGGACAAGACCCTCCTGCTTTCCGATTCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCGGTTCGGTCGCACCGGAAGAACATGTTTGCTGCAGCAGCCCAAAAGAGCAGCAGCGGATCAGGAGATCAGGAGAACAGCCCTAATGGATCGGGAAGTTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAACAGTTACCCTCAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCTTTTACCATTGGGAATTGCGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTGTTGAACAGCTCCGATTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCGTGGGAGATGTTTGTTGAATCTTGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCTAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 759 0.4941 MEVIGLKEKKMVFEETELRLGLPGNGSAKATTEAAAARKRGFSETESDSENETITTVDLKLNLSPKEAASSAAVADPPPKDKTLLLSDSAKPPAKAQVVGWPPVRSHRKNMFAAAAQKSSSGSGDQENSPNGSGSFVKVSMDGAPYLRKVDLKMYNSYPQLSDALGKMFSSFTIGNCESQGIKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi596g00010 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 239 IPR003311 GO:0005634|GO:0006355
Sebi596g00010 252 FunFam Auxin-responsive protein 129 244 - -
Sebi596g00010 252 Pfam AUX/IAA family 15 243 IPR033389 -
Sebi596g00010 252 SUPERFAMILY CAD & PB1 domains 126 233 - -
Sebi596g00010 252 MobiDBLite consensus disorder prediction 21 136 - -
Sebi596g00010 252 MobiDBLite consensus disorder prediction 113 136 - -
Sebi596g00010 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Sebi596g00010 252 Gene3D - 129 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi596g00010 Sebi-Chr596 238719 240524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi596g00010 122 232 B3 DNA Binding Superfamily AT5G37020 34.234 3.25e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi596g00010 AUX_IAA 8.9e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi596g00010 K14484 - gmx:100780214 363.229