Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi595g00049 ATGGTAAGGGGAGGAAAGTTTAGTGGCAAAAGCAATTTCAGGAAAAAAGGTCGGTCAAAGGAGGGAAGTTCTGATGATTCTGATGAGGACTATGTGGTCTCAGATGAAGGTAGAGACGTCTCTGACTATTATTGCTCCTCGTTGGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATTGAGGATGAGGAATTTCAAGGAGTGAGGAATTCTAATAGATCCAAGGCAAAAATTCGCATTCGTGGTGGTCGGAAGAAAAATGCAAAAGATGATGAATTTCCAGAAGATGATGAATTTACAGCAGAGGAAGAAGATTATTCAGATGACGAAGAAGAAATGAGTGGGAGGCAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTGTTGAAGAAAAAGGCCTCTGTGGTTTCTACCAAAGGTGGAAAAAGGCGAAGTTCTAGAGCATCAAAGAAGCCCATGAGAACCAAACCAAGAAAGAATGGGAGGTTAAGGAGGAAAGTAAAATGTGACAATGAAGGTGATTTTATAGATAATGGCCCAGCCATCAGGACAAGTAGGAAAAAACAGGCCCGAAAGAGGAGAAGGATGATTCTTTCAGATTCAGATTGTGTGTCTTTGGGATCAACTGATTTTGAGTATACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAGCTTGAGAAATAACTTGAGGAGTTCATCCCTTCAAATAAACAATGAAGAGGCTGGAGTCCAAGAAGATCTACATCTGCAACAGAAGCCCCCAGGTCGGAAGGGTAAGGAGAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGAACTTAAAAAGTGAGGTGGGAAAGCAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACGATGGGAATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGAGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTTATTTGTTCAGAGTGTCATCTAGGTGGAGATGATGGCCTTATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGCTGAACCAAGAGTGACAATCCAGAGCCTGCCTGCTAGACCATCCCCTCTTCTACATGTACGAGAAACTATAGACCTCAACTTGATTTCTTCACCCCTTGCAGTTTCCAATCAAGGGTTTGTGCATCTTTCATCTTCTAGATTTATTGGCAGAAGTGTCGATGGAGCTTCTCCAGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACAGCGTCAAATTCATCAGCTACGTTCAGTAGATAGGATGACTACTACAACTGGCAGAACTAATAGTATTTCAGCTATCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAATGTAGGGAAACAGCCCCTCAAAATACAAGGACACAGGATGTGGGAACATCATACCACACATTCTTTGAAGAGAGATTATACAGCAATATTTCTCCATTAATGCAGAATGGGACATCATGGCCTGGACATGTGGGGACACCTTCAGTACCTGATTGTGAACAAGTCCATCAGTTCAGCAGATCAAACATGGTCACTGATGGTAGCTCATCTCCTGCCGTAATAGAAGACTTTCACATTGTGAAGGAGCAGGTGCACTCAATGGTTAAAAGCCACCTAAAGAGCCTGTCTCAAAATATTGATTTAGGCCACAGTACTCTCAAGGACATTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACATGAAGAATGAGGTTCGCACTGTGCCTCCCCCATCCGTCTGTCCGCACATTGAACTGACGGCTGGAGATGTGGTGAAGAGGATTTTGGATACAAGAATGCCTTCCCAGTGGTTACGATTAGGTCTTTAG 2079 0.4315 MVRGGKFSGKSNFRKKGRSKEGSSDDSDEDYVVSDEGRDVSDYYCSSLDGCASEESFDSFIEDEEFQGVRNSNRSKAKIRIRGGRKKNAKDDEFPEDDEFTAEEEDYSDDEEEMSGRQKKNNGMKMGKKVLKKKASVVSTKGGKRRSSRASKKPMRTKPRKNGRLRRKVKCDNEGDFIDNGPAIRTSRKKQARKRRRMILSDSDCVSLGSTDFEYTISEEEREQVREAKKLCGSLRNNLRSSSLQINNEEAGVQEDLHLQQKPPGRKGKEKIEEPQGRKGKEKVENLKSEVGKQWAKVESRCPLCKQRFKTISKPARSTMGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEAEPRVTIQSLPARPSPLLHVRETIDLNLISSPLAVSNQGFVHLSSSRFIGRSVDGASPVSGGAPTLSERRWIQRQIHQLRSVDRMTTTTGRTNSISAISSTSNLYSSQIDQCRETAPQNTRTQDVGTSYHTFFEERLYSNISPLMQNGTSWPGHVGTPSVPDCEQVHQFSRSNMVTDGSSSPAVIEDFHIVKEQVHSMVKSHLKSLSQNIDLGHSTLKDIARSSMHTILAACGLEHMKNEVRTVPPPSVCPHIELTAGDVVKRILDTRMPSQWLRLGL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi595g00049 692 SMART PHD_3 356 401 IPR001965 -
Sebi595g00049 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 406 IPR013083 -
Sebi595g00049 692 Coils Coil 218 238 - -
Sebi595g00049 692 MobiDBLite consensus disorder prediction 122 166 - -
Sebi595g00049 692 ProSiteProfiles Zinc finger PHD-type profile. 354 403 IPR019787 -
Sebi595g00049 692 SUPERFAMILY FYVE/PHD zinc finger 327 402 IPR011011 -
Sebi595g00049 692 MobiDBLite consensus disorder prediction 95 111 - -
Sebi595g00049 692 MobiDBLite consensus disorder prediction 260 281 - -
Sebi595g00049 692 Pfam PHD-finger 356 402 IPR019787 -
Sebi595g00049 692 PANTHER F18C1.6 PROTEIN 294 673 - -
Sebi595g00049 692 MobiDBLite consensus disorder prediction 249 281 - -
Sebi595g00049 692 MobiDBLite consensus disorder prediction 63 197 - -
Sebi595g00049 692 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi595g00049 Sebi-Chr595 548728 551875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi595g00049 351 400 C2H2 Transcription Factor Family AT3G01460 46.154 5.80e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi595g00049 PHD 1e-08 CL0390