Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi595g00031 ATGAAGATAACGTGCCAGATGAAGACGGCGAAGATGCTGACGACGATAAACAGCAATGTTGATCCTGAAATTAGCAAGCGAGAGAAGGCCAGATTGAAAGAAATGCAACAATTGAAGAAACAGAAGATTCAGGAGATATTGGATGAACAAAATGCAGCCATTGATGCTGATATGAACAATAGAGGAAAGGGCCGATTGAAGTATCTCTTACAGCAAACTGAGCTCTTTGCTCATTTTGCCAAAAGTGATCAATCTTCATCTCAAAAGAAGTCAAAGGGAAGGGGACGCCATGCATCAAAAGTGACCGAAGAAGAGGAGGATGAAGAATACCTTAAAGAAGAAGATGGTTTAGCAAACACACGGCTGGGGATGTATCCAAGGGAAGATGAGGGATTACCACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACCTTACAAACTATCTCTTTGTTGGGCTATTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTACGTGCAATAAAGTTCCTTGGCAATCCTGATGAAAGGAGGCATATAAGAGAGGAGCTATTGGTTGCTGGAAAGTTTGATGTGTGTGTGACGAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGTTACATAGTTATTGATGAAGCCCATCGTATCAAGAATGAGAACTCCCTCCTGTCCAAAACGATGAGGCTATACAATACAAACTATCGACTCCTTATAACTGGCACACCACTGCAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTGTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAGCAACTACACAAGGTCCTCCGTCCATTTCTTCTTCGAAGGCTGAAATCAGATGTTGAGAAAGGGTTGCCACCAAAAAAAGAGACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAGGGCATTGCTGCAGAAGGATCTCGAGGTTGTGAATGCTGGTGGAGAACGGAAACGTCTGCTAAATATAGCAATGCAATTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACAACAGGAGACCATCTCATTACAAATGCAGGTAAAATGGTTCTACTGGATAAATTACTTCGTAAACTAAAAGAACGGGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGTTAGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGATAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGAATTAATCTTGCTATTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGAATTGGTCAAAAGAAAGAAGTTCAAGTTTTTCGATTCTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCATACAAAAAACTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCCATTAGCTGAGCAGAAGACTGTTAATAAAGATGAATTGCTGCAAATGGTTAGATTTGGGGCTGAAATGGTTTTTAGTTCCAAGGATAGCACAATTACAGATGAAGATATTGACAGAATTATCGCTAAAGGAGAGGAAGCAACGACTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTCAAGATGGATGACACTGCTGAGTTGTATGCTTTTGATGATGAGAAGGATGAAAAAAAAGTTGATTTCAAAAAACTTGTGAGTGAAAATTGGGTTGAGCCACAAGAAGAGAACGGAAGCGCAATTACTCAGAGTCTGAGTACTTCAAGCAAACACTGCGCCAAGGTGGTCCTACTAAACCAAAAGAACCCCGAATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGGCAAACACATCAGAAGAATCAGATAAAAGATTCCATAGATGTTGATGAACAAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCATCTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGACTTCAATACTTTCATCAGGGCATGTGAAAAGTATGGCCGAAATGATGTAAAAAGTATTGCTTCTGATGGAAGGAAAAACAGATGA 2412 0.4096 MKITCQMKTAKMLTTINSNVDPEISKREKARLKEMQQLKKQKIQEILDEQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKSDQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEDGLANTRLGMYPREDEGLPLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEICSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLRKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSDKFVFLLSTRAGGLGINLAIADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGPLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATTELDAKMKKFTEDAIKFKMDDTAELYAFDDEKDEKKVDFKKLVSENWVEPQEENGSAITQSLSTSSKHCAKVVLLNQKNPEFLGCLNCMISSFSTHKGWQTHQKNQIKDSIDVDEQEEVGDPLTAEELEEKEHLLEEGFSSWSRKDFNTFIRACEKYGRNDVKSIASDGRKNR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi595g00031 803 Gene3D - 768 803 - -
Sebi595g00031 803 CDD SF2_C_SNF 430 555 - -
Sebi595g00031 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 306 IPR014001 -
Sebi595g00031 803 Pfam Helicase conserved C-terminal domain 432 544 IPR001650 -
Sebi595g00031 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 344 IPR027417 -
Sebi595g00031 803 SMART helicmild6 460 544 IPR001650 -
Sebi595g00031 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 628 IPR027417 -
Sebi595g00031 803 CDD DEXHc_SMARCA1_SMARCA5 134 346 IPR044754 GO:0005524
Sebi595g00031 803 SMART ultradead3 125 317 IPR014001 -
Sebi595g00031 803 ProSiteProfiles SANT domain profile. 767 803 IPR017884 -
Sebi595g00031 803 MobiDBLite consensus disorder prediction 81 113 - -
Sebi595g00031 803 Gene3D - 350 642 IPR027417 -
Sebi595g00031 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 585 IPR001650 -
Sebi595g00031 803 FunFam Chromatin-remodeling complex ATPase 130 345 - -
Sebi595g00031 803 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 33 791 - -
Sebi595g00031 803 Coils Coil 25 52 - -
Sebi595g00031 803 Gene3D - 133 345 IPR038718 -
Sebi595g00031 803 FunFam ISWI chromatin-remodeling complex ATPase CHR11 350 642 - -
Sebi595g00031 803 Pfam SNF2-related domain 147 409 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi595g00031 Sebi-Chr595 340385 347240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi595g00031 150 571 RAD5 or RAD16-like Gene Family AT1G02670 28.119 1.32e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi595g00031 SNF2_N 3e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi595g00031 K11654 - gmx:100791510 1306.58