Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi595g00021 ATGAGCCAAGAAGATGGACAAAAGAAAAAGAGAATCGCCATAATTGGCGTCTCTACATTTTTACTTGTGGGTATGGTAGTTGCCATTACAATTGGCGTTAACGTCAGTCAGGGTGATTCCAATGATTCAAAAAATACCGACAAGGCACGCATAGCTGCCACTGCAAAAGCAGTTAGAAGTTTTTGCAATCCAACGGATTATAGGAAAGAGTGCGAGGAAAGCCTCATGGAAACCGCTCTCAACACAACAGACCCAAGAGAACTCATTAAAATCGCCTTCAACATAACCATTAGAAAAATCGGTTCTGGACTCAAGAAAACCGATATCTGGCATGAGGTTGAGAAGGATCCAAGGGCTAAGATGGCACTTGACACGTGCAAACAACTCATGGATCTTTCAATTGAGGAATTCAAAAGGTCACTTGAGAGAATCGGCACGTTTGATCTCAACAATCTCGATAACATCCTCACGAACTTAAAGGTGTGGCTTAGCGGTGCAGTCACATACCAAGATACTTGTTTAGATGGTTTTGAGAACACCACAAGTGATGTTGGTGTGAAAATGAAGAACTTATTAACAAGCACAATGCACATGACGAGCAATGCCCTTGCTATCATTATAGATCTGGAAACAGCATTTTTAGATATGAATCTATCAACAGAGAGGCGTAGCGCCATTGAGGAATATCCTGTGGAGGATGAATGTCATCATGGTCTTCAGGATGATACAGATCAGCTTCCTTCTTGGGTTGATGATTGTCATGGTGTTGGTGTTCGTAGACTCCTTCATGATAATCCACACAAACTCAAGCCTAATTTGGTTGTAGCCAAAGATGGCAGTGGAAAATACAAGAGCATCAGTAAGGCATTGAAGAAAGTGCCTAAGAAGAACAAAAAACCATTCGTGATTTACATCAAGGAAGGCGTTTACCGTGAGTATCTTGAAATTACCAAGAAAATGACACACGTCGTGTTCGTTGGTGATGGTGGCAACAGGACACGAATCACTGGCAACAAAAATTTCATAGATGGAATTAACACTTACAGAACCCCCACTGTTACTGTTCAAGGAGATTACTTTGTGGCAATCAATATAGGGTTTGAGAATTCTGCTGGTCCTCAGAAACATCAAGCAGTGGCCATAAGGGTTCAAGCAGACAAATCCATCTTTTACAAATGCACAATGGATGGGTATCAAGACACGTTATATGCTCATGCCATGCGCCAATTCTATAGGGATTGCACAATTTCAGGCACAATTGATTTTATCTTTGGTGATGCAGTAGCTGTATTTCAGAATTGCACTTTCGTGATTAGAAAGCCGTTGGAAAATCAACAATGTATTGTAACTGCACAGGGAAGGAGGGAGAGGCATCAACCATCAGGAATTATCATTCAAGGGGGTTCCATTGTGCCTGATCACACGGTGAAGTTTGATAACAAGGCCTACTTAGCTCGTCCATGGAAGAATTTCTCTAGGACCATCTTTATGGATACTTATATTGGGGGTTTGATTCAACCTGATGGATATATGCCATGGCAAGGACCACAGGGTCCTTCTGGTATGAACACATGTTTCTATGCAGAGTACAACAACACTGGACCTGGTTCTGATAAATCAAAACGTGTAAAATGGCGTGGGATCAAGACCCTCACATCACAATCCGCAACTAAATTCATACCAGCTAAATTCTTTCATGGAGACGATTGGATCAGGGTTACTAGGATACCTTACTCCTCTGGCTTGCCCCGCCACACAAGCACTAAATAA 1770 0.4192 MSQEDGQKKKRIAIIGVSTFLLVGMVVAITIGVNVSQGDSNDSKNTDKARIAATAKAVRSFCNPTDYRKECEESLMETALNTTDPRELIKIAFNITIRKIGSGLKKTDIWHEVEKDPRAKMALDTCKQLMDLSIEEFKRSLERIGTFDLNNLDNILTNLKVWLSGAVTYQDTCLDGFENTTSDVGVKMKNLLTSTMHMTSNALAIIIDLETAFLDMNLSTERRSAIEEYPVEDECHHGLQDDTDQLPSWVDDCHGVGVRRLLHDNPHKLKPNLVVAKDGSGKYKSISKALKKVPKKNKKPFVIYIKEGVYREYLEITKKMTHVVFVGDGGNRTRITGNKNFIDGINTYRTPTVTVQGDYFVAINIGFENSAGPQKHQAVAIRVQADKSIFYKCTMDGYQDTLYAHAMRQFYRDCTISGTIDFIFGDAVAVFQNCTFVIRKPLENQQCIVTAQGRRERHQPSGIIIQGGSIVPDHTVKFDNKAYLARPWKNFSRTIFMDTYIGGLIQPDGYMPWQGPQGPSGMNTCFYAEYNNTGPGSDKSKRVKWRGIKTLTSQSATKFIPAKFFHGDDWIRVTRIPYSSGLPRHTSTK 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi595g00021 589 FunFam Pectinesterase 54 210 - -
Sebi595g00021 589 SMART PMEI_2 53 205 IPR006501 GO:0004857
Sebi595g00021 589 Pfam Pectinesterase 272 568 IPR000070 GO:0030599|GO:0042545
Sebi595g00021 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 206 IPR035513 -
Sebi595g00021 589 NCBIfam pectinesterase inhibitor domain 52 207 IPR006501 GO:0004857
Sebi595g00021 589 SUPERFAMILY Pectin lyase-like 270 581 IPR011050 -
Sebi595g00021 589 CDD PMEI-like_3 60 206 - -
Sebi595g00021 589 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Sebi595g00021 589 PANTHER PECTINESTERASE 21 572 - -
Sebi595g00021 589 FunFam Pectinesterase 266 582 - -
Sebi595g00021 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Sebi595g00021 589 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Sebi595g00021 589 Gene3D - 266 582 IPR012334 -
Sebi595g00021 589 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi595g00021 Sebi-Chr595 231058 232984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi595g00021 4 582 Carbohydrate Esterase AT3G05610 48.464 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi595g00021 K01051 - gmx:100794799 859.366