Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi595g00019 ATGTCTGGGGGAGATGCACAGAAGGGAAAGAGCATTGCAATCATTGGTGTATCTGCCTTATTACTAGTGGCTATGGTTGTGGCCGTCACAATTAGTTACAATAAAAACGATACAAAAAATGATATAGAGGACAATAGGAAGCACCACGTGGCTTCCACAATCAAAGCAGTCCAAACCCTTTGTCATCCCACCGATTACAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCAACACCACTGACCCAAAAGAATTGATCAAAATTGCCTTTAACGTTACCATTAAGAAAATTGGTGACAAACTCAAGGAAACAGAGCTATTGCACGAGGTTGAGAAGGAACCTAGAGCTAAGATGGCACTTGACACGTGTAAGCAACTCATGGATCTTTCAATTGAGGAATTCAAGAGGTCAATTGATGAAATAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACCAGCGAAGCTAGTGCAAAGATGAAGGAACTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCAGATTCTGCTGACACTGTCTCAGATTGGAATGTCACAAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGACTACTCCTTCTTGGGTTGATGAACGAACTCTCCTTGGTACAAACACAAGTACATTCAAGCCTAATTTGACTGTGGCTATAGATGGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGAACAATGAAGAGCCATTTGTTATATACATCAAGGAAGGCATTTACCAAGAGTATGTTGAAGTTACCAAGCAAATGACCTATGTGGTGTTTGTTGGTGATGGTGGCCAAGAGACAAGAATCACTGGCAACAAAAATTTCATAGATGGGATTAACACCTACAGAACCGCTACAGTTGCAATTCAAGGAGATCATTTTGTTGCTATTAATATGGGTTTTGAGAACTCTGCTGGGCCCCACAAGCATCAAGCAGTGGCATTAAGAGTTCAAGGAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTCGTCTTTGGTAATACGCTGTCAGTTTTCCAGAACTGCACTTTTGTGGTGCGAAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGAAGGAAAGAAAGGCGACAACCATCAGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTTTATGAAGTGAGGTTTGAGAATAAGGCGTACCTTGCTCGTCCATGGAAGAATTACTCAAGGACTGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCACAATACTGGTCCCGGTTCTGATAAATCCAAACGTGTCAATTGGGCTGGGATCTGGAACCTCAATTCAAAAGCCGCAAACTCATTCTCACCATCCAAGTTCTTTCATGGGGATGATTGGATTGAGGTTACTGGGATTCCTTACTTTCCTGGCGTTCCTACCCACCATAGGCACAAAAAGACAATACTTAATTGGTGA 1671 0.4249 MSGGDAQKGKSIAIIGVSALLLVAMVVAVTISYNKNDTKNDIEDNRKHHVASTIKAVQTLCHPTDYKKECEESLIAEAGNTTDPKELIKIAFNVTIKKIGDKLKETELLHEVEKEPRAKMALDTCKQLMDLSIEEFKRSIDEIVTYQDTCLDGFENTTSEASAKMKELLTTGMHMSSNALAIVSDSADTVSDWNVTKLFGRRLLQDSETTPSWVDERTLLGTNTSTFKPNLTVAIDGSGDFKSINEALKHVPENNEEPFVIYIKEGIYQEYVEVTKQMTYVVFVGDGGQETRITGNKNFIDGINTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNTLSVFQNCTFVVRKPLKNQQCIVTAQGRKERRQPSGIVIQGGSIVSDPLFYEVRFENKAYLARPWKNYSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANSFSPSKFFHGDDWIEVTGIPYFPGVPTHHRHKKTILNW 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi595g00019 556 Gene3D - 224 543 IPR012334 -
Sebi595g00019 556 CDD PMEI-like_3 59 184 - -
Sebi595g00019 556 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Sebi595g00019 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 185 IPR035513 -
Sebi595g00019 556 PANTHER PECTINESTERASE 15 533 - -
Sebi595g00019 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 184 IPR035513 -
Sebi595g00019 556 ProSitePatterns Pectinesterase signature 1. 255 274 IPR018040 -
Sebi595g00019 556 Pfam Pectinesterase 230 529 IPR000070 GO:0030599|GO:0042545
Sebi595g00019 556 FunFam Pectinesterase 224 543 - -
Sebi595g00019 556 Pfam Plant invertase/pectin methylesterase inhibitor 56 182 IPR006501 GO:0004857
Sebi595g00019 556 NCBIfam pectinesterase inhibitor domain 52 143 IPR006501 GO:0004857
Sebi595g00019 556 SMART PMEI_2 52 182 IPR006501 GO:0004857
Sebi595g00019 556 SUPERFAMILY Pectin lyase-like 225 542 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi595g00019 Sebi-Chr595 220025 221844 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi595g00019 5 543 Carbohydrate Esterase AT3G05610 47.788 0.0 564