Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi595g00017 ATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTTGTCTTTGGTAATGCGCTGTCAGCTTTCCAGAACTGCACTTTTGTGGTGCGAAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGAAGGAAAGGAAGGCAACAACCATCGGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTTTATGAAGTGAGGTTCGAGAATAAGGCGTACCTTGCTCGTCCATGGAAGAATTACTCAAGGACTGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCACAATACTGGTCCCGGTTCTGATAAATCCAAGCGTGTCAATTGGGCTGGGATCTGGAACCTCAATTCAAAAGCCGCAAACTCATTCTCACCATCCAAGTTCTTTCATGGGGATGATTGGATTGAGGTTATTGGGATTCCTTACTTTCCTGGTGTTCCTACCCACCATAGGCAAAAAAAAGACATTACTTAA 609 0.4319 MDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSAFQNCTFVVRKPLKNQQCIVTAQGRKGRQQPSGIVIQGGSIVSDPLFYEVRFENKAYLARPWKNYSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANSFSPSKFFHGDDWIEVIGIPYFPGVPTHHRQKKDIT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi595g00017 202 Pfam Pectinesterase 1 177 IPR000070 GO:0030599|GO:0042545
Sebi595g00017 202 PANTHER PECTINESTERASE 1 181 - -
Sebi595g00017 202 ProSitePatterns Pectinesterase signature 2. 22 31 IPR033131 -
Sebi595g00017 202 SUPERFAMILY Pectin lyase-like 2 190 IPR011050 -
Sebi595g00017 202 Gene3D - 1 192 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi595g00017 Sebi-Chr595 204021 204629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi595g00017 1 188 Carbohydrate Esterase AT5G49180 51.596 2.85e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi595g00017 K01051 - lja:Lj0g3v0289939.1 382.104