Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi594g00022 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTTGAGGAGGCACCACAGTCACCGGAGTCCCTAGCAACAAGGGATTTCTCTGCCAGTGGAATATCTTCAAGGACTGGGGATTGGGAACCGAAATTTGATGAAGCCCAAGTAGAAGACGTTGAATCTACTCTCAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGGAATTTTGATGCTGCCCTTCAAGTGTTTCAGGGGATAGAAATCAGGGCTTTGACCCCAAGGATGATCAGGGCTATAGCTGAAAGAACCAAGCAAAGAAAACCACGTTTCAAGGCAGATAATGTGCTTCCCAATTTGATGTCAATGCATTCAATAAGCCTCCTTCTTGAGGCAATTTTGCTTAAAGCCAAATCCTTAGAGGAACTTGGGAGACACACTGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAGTTGAATCTGCTCTTCCTAATGGAATGGTTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCAGGCCTTCTAGATGAAGCTGTCACTGCTTACCGACTGGCCCTGGTCAAGCCCTGGAATTTGGAGCCACTTAGGTTGGCCTGTCTACAAAAAGATTTAGCTACCACATTGCTCTATGGTGGTGTTGAAGTAAACCTACCCTCTAAGTTGCAAGGGAAGGGTCCAACAACACCTATGAGTAACATTGAAGAAGCAATACTTTTGCTACTATTACTCTTAGGAAAGATGGCACTTCAGGAAATAGACTGGGATGCAGAAATAATGGATCATCTTACATTTTCACTCTCAATTTCTGGGATGTTTGAATCATTGGCAGATCGTGTAGAGCAGATCCTTCCCGGTATCTATGATCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACACTGCAGCAGGACAGAATGAAGCAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCAGAAGCAAAGCATAAACCCCATTTTCCTTCATTTTTATTTGGTGCAAAGCTGTGTTCCCAATATCCTAACCATGCTCATGAAGGCATTAAATTTTCAAGGAAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTTTGTGTCAAGGCAAGAAATTTCTTGGTATTTGCTATGGGGCTGCGGCTAGAAAATCTGTACTGGATTCTGAAAGAATTACATTTCAAAGAGAGTCTTTGAACTTTCTAAATGAAGCTGCTCTAACTGGAAATGATGACCCAGAAGTGATATTCAGCCTTGGATTAGAAAATGCACTTCAAAGGAATCTAAATGCAGCTTATTACAACATAATGATGTACTCAGATATGATGGTTGGCAGCTCTAGAAGAGGTTGGCAGCTGTTAGCACTCATAGTATCTGCACAGCAGAGGTTTAAGGATGCAGTAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGAGGATAGATCAATTAGAACTACTAAGACTAAAATCTGTACTTCAAATTGCACAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTATCAGTAATAGAAGCAAAAAAGGAGTTTTGGCTTCAAGCTAAGAACTTTGATCAAGAAAAAATATCCAAGGATGAGGCAATAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGACTTGGCAACCATTTATGCAGATCTTAGTTCTTTCCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAATTGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACAGGGATGTTGTTTGAAGCTCAATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAATCTCATTATCAATAGAACCAGATTACATTCCCAGTATCATTTCAACTGCAGAATTGTTGCTTAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTGCGATTGGAACCAACAAACCATGATGCGTGGTTCAACCTTGGATTAGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGTTTTCAAGCTGCATATGAGCTGAAACTTTCAGCTCCAGTGCAAAAAATTGAGTGA 2148 0.4092 MLCACSGEQFKFEEAPQSPESLATRDFSASGISSRTGDWEPKFDEAQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIEIRALTPRMIRAIAERTKQRKPRFKADNVLPNLMSMHSISLLLEAILLKAKSLEELGRHTEAAKECRIIVDTVESALPNGMVEGIGEDCKLQEMFHKALELLPNLWIKAGLLDEAVTAYRLALVKPWNLEPLRLACLQKDLATTLLYGGVEVNLPSKLQGKGPTTPMSNIEEAILLLLLLLGKMALQEIDWDAEIMDHLTFSLSISGMFESLADRVEQILPGIYDRAERWYFLALCYTAAGQNEAALNLLRKACGSSEAKHKPHFPSFLFGAKLCSQYPNHAHEGIKFSRKVIDLAKHQNEHFLCQGKKFLGICYGAAARKSVLDSERITFQRESLNFLNEAALTGNDDPEVIFSLGLENALQRNLNAAYYNIMMYSDMMVGSSRRGWQLLALIVSAQQRFKDAVTIVDFALDEAGRIDQLELLRLKSVLQIAQQQPKQAIETYRILLSVIEAKKEFWLQAKNFDQEKISKDEAITERKLEMEAWQDLATIYADLSSFLDAKACVDKAQLIEFFSPRSWHITGMLFEAQSLYKEAFVSFSISLSIEPDYIPSIISTAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKIE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi594g00022 715 Gene3D Tetratricopeptide repeat domain 548 658 IPR011990 GO:0005515
Sebi594g00022 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Sebi594g00022 715 SUPERFAMILY TPR-like 65 461 IPR011990 GO:0005515
Sebi594g00022 715 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Sebi594g00022 715 Coils Coil 56 76 - -
Sebi594g00022 715 Gene3D Tetratricopeptide repeat domain 16 218 IPR011990 GO:0005515
Sebi594g00022 715 SMART tpr_5 572 605 IPR019734 GO:0005515
Sebi594g00022 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Sebi594g00022 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Sebi594g00022 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Sebi594g00022 715 MobiDBLite consensus disorder prediction 15 34 - -
Sebi594g00022 715 SUPERFAMILY TPR-like 562 706 IPR011990 GO:0005515
Sebi594g00022 715 Gene3D Tetratricopeptide repeat domain 659 711 IPR011990 GO:0005515
Sebi594g00022 715 Gene3D Tetratricopeptide repeat domain 257 547 IPR011990 GO:0005515
Sebi594g00022 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Sebi594g00022 715 SUPERFAMILY TPR-like 302 542 IPR011990 GO:0005515
Sebi594g00022 715 Pfam Tetratricopeptide repeat 317 347 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi594g00022 Sebi-Chr594 620010 622985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi594g00022 1 712 Calmodulin-binding Proteins AT1G27460 58.659 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi594g00022 K21843 - gmx:100799086 1213.36