Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi594g00001 ATGGTGGGGTGGGTTGCAAGGGGTGGGGGAGAAGAGGGAGTGGGAGTTGTGGTGGTTGAGATTGTTCGAGAAGAAACAGAAAGAAAAAGCTCCGTAGCCATGGCGGTGTTGTCAGAAGTGATGGAGGATGATGAACTTGACGAAGAACCAGGCGAGGTCATCGAATCGGCACCGCCCCAGAAGGTAGGCGAAGAGAGGCAACTCGGTAGTAACTCCTCTCTCAAAAAGAGGCTCCTCAAAAGCGGACATGGATGGGAAACCCCCGACTTCAACGACCAAGTCACTGTTCACTATGTCGGAACTTCACCTAACGGAACAAAGTTCAATTCCACTAGGGATTCAGATCAACCTCTGACATTCACTCTTGGTCAAGGTAAAGTGTATGCTGGGTTGGATCATGGGATTATCACCATGAAGAAGGGAGAGGTGGCATTGTTCACGTTACTTGCTGAGTCTGGAGGAGTTCCACATGACTCCAACTCGGTTGTGCAGTTTGAGGTGGAACTCATTTCGTGGATCAATGTGGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGAGCGGCCTGGTGATCTAGATGAAGTCCTTGTGAAGTATCAGGTGGCACTAGTTGATGGTACTGTTGTTGCAGAAACACCAGAAGCAGGAGTTGAATTTCATGTGAAGGATGGTCATCTTTTTCCTAGATTGCCAAACGTAGTCATGACTATGACAAGGGGAGAGAAGGCTGAGTTAGTTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAGGCTGGCAGCGGGCTCCATTCAATTCCCCCAAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTGTGAAAGAAGGGGAGGGTGCTTTCACAGCCGGTGAGGGTGCAAATGTTACTGTCAGCTACACAGCTATGCTAGAAGATGGCACTGTATTTGAGAAAGGAGGAATTGGTGAAACACAACCCGTGAAGTTCATAACTGATGAGGAACAAGTGATTGCTGGTCTAGACCGAGCGGTGTCAACAATGAAAAAAGGTGAGAGGGCCATAATTAGCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATTTAGCTATCGTGCCACCAGGCTCGAATGTAGTGTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATCAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTGTTTAAAGGTGGCAAGTATCATCAAGCAGGGAAGAAGTATGAAAAGGCTGCCGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCACAAGCTAGCTAAGGCATTGAGAGTGACATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAACTATGTTCTCAGGTGCTTGATGTTGAGGTTTACAATGTAAAAGCTTTGTACAGACGGGCACAAGCATTTATAGAGACTGGAGACTATCTTTTGGCAGATATAGACATCAAGAAAGTTCTTGAGGTGGACCCTCATAACAGGGAGGTAATGATAATTAAGAGGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATGTTTGCACCTAAAACAAAGGACTCATCCATGGCAACAAAGGTGATTGGTGTTTAG 1773 0.4467 MVGWVARGGGEEGVGVVVVEIVREETERKSSVAMAVLSEVMEDDELDEEPGEVIESAPPQKVGEERQLGSNSSLKKRLLKSGHGWETPDFNDQVTVHYVGTSPNGTKFNSTRDSDQPLTFTLGQGKVYAGLDHGIITMKKGEVALFTLLAESGGVPHDSNSVVQFEVELISWINVVDVCKDGGIIKKIMEKGKGNERPGDLDEVLVKYQVALVDGTVVAETPEAGVEFHVKDGHLFPRLPNVVMTMTRGEKAELVVQPQYAFGEKGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKIVKEGEGAFTAGEGANVTVSYTAMLEDGTVFEKGGIGETQPVKFITDEEQVIAGLDRAVSTMKKGERAIISIHPDYAFGNVEVRRDLAIVPPGSNVVYDIEMMDFIKEKAPWELNSNQKIEVAGRKKEEGNLLFKGGKYHQAGKKYEKAADFVSEDGSFGDDEHKLAKALRVTCWLNGAACSLKLNDFPGAIKLCSQVLDVEVYNVKALYRRAQAFIETGDYLLADIDIKKVLEVDPHNREVMIIKRKLKQLQADSDKKDAKLYENMFAPKTKDSSMATKVIGV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi594g00001 590 SUPERFAMILY TPR-like 425 575 IPR011990 GO:0005515
Sebi594g00001 590 ProSiteProfiles TPR repeat profile. 512 545 IPR019734 GO:0005515
Sebi594g00001 590 SMART tpr_5 478 511 IPR019734 GO:0005515
Sebi594g00001 590 SMART tpr_5 429 462 IPR019734 GO:0005515
Sebi594g00001 590 SMART tpr_5 512 545 IPR019734 GO:0005515
Sebi594g00001 590 MobiDBLite consensus disorder prediction 43 73 - -
Sebi594g00001 590 SUPERFAMILY FKBP-like 298 429 - -
Sebi594g00001 590 FunFam Peptidylprolyl isomerase 176 292 - -
Sebi594g00001 590 SUPERFAMILY FKBP-like 71 176 - -
Sebi594g00001 590 Gene3D - 66 174 IPR046357 GO:0003755
Sebi594g00001 590 Gene3D - 292 416 IPR046357 GO:0003755
Sebi594g00001 590 Gene3D - 175 291 IPR046357 GO:0003755
Sebi594g00001 590 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 317 408 IPR001179 GO:0003755
Sebi594g00001 590 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 197 289 IPR001179 GO:0003755
Sebi594g00001 590 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 87 170 IPR001179 GO:0003755
Sebi594g00001 590 SUPERFAMILY FKBP-like 177 292 - -
Sebi594g00001 590 Gene3D Tetratricopeptide repeat domain 417 572 IPR011990 GO:0005515
Sebi594g00001 590 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 320 412 IPR001179 GO:0003755
Sebi594g00001 590 FunFam Peptidylprolyl isomerase 417 572 - -
Sebi594g00001 590 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 91 292 IPR001179 GO:0003755
Sebi594g00001 590 PANTHER PEPTIDYLPROLYL ISOMERASE 174 293 - -
Sebi594g00001 590 FunFam Peptidylprolyl isomerase 293 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi594g00001 Sebi-Chr594 23132 28804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi594g00001 61 575 Calmodulin-binding Proteins AT3G25230 54.023 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi594g00001 K09571 - gmx:100798382 849.736