Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi593g00013 ATGTTACATTTTTGTGCCACAACAATTGTGAAAGATGCAGGTTGTGATGAAAGCATCATTCCTCACCATGTTTTTGAATTTGTTAATCTTGATGATTTACAAAGTCGGTGTGGAAAGGATGTGTTGACAGATGTGATTGGAGTTATCACAAAAGTTGGTCCAATTGAAGAGAAGAGGACTATTGGGGGCAGCGTTGATACCTTGACACTTCACTTACAAGACATAAGGGGAAATAGGGTTAAAGTGACAATATGGGATGAATATGTAAAGCTATTTGAGCAGAAATTGAAAGAAAATGTGTCTAAAGATCCTCAAGTCACTGTTGCAATTTTCACATCAACTATAATTAAAGAATTTCGAGGTGAATTGTCTATTTCCACATCAAGATCAACAAATATTTATGTCAACATAGACATACCAGAATCTAATGAGCTCATACAATCATTCAAGGATTCAAGTGATGAACCTATAGTTGGTAACTTTGAGGTGTCAAAGGATGGTGTCTGTCCTAAAACAGTGAAGACTATAGCTGAACTTCTGTCCATGGCAAGTTTAAAGAGTAATACGAATGATGTGTATTGTTGTGCTGCTACTGTAAACGATATCTTGCTGAAAAATGGTTGGAATTATGTTTGTTGCCCTCATTGCAAAAAAAAGGCTGATAGGACAACTACAAATTTCAGTTGTCAACATTGCCACAAAGTTGTTGAGTATCCAATGACAAGGTTGCGTTTGGAGCTTGATGTCAAAGATTCAACAGATTCTACCATATTTGTTCTATTTCATGAAGTTGCTGAACAATTAACACAATTGAACTTAGGAGACCATGCCACAACCTTTGAAAATGAAAATGGTGATGATTTGAACCTGCCACCCCAACTCCTAAAAATCATAGGTTGCAGTCAGATGATGAAGAATCATGATACAAGCAACGAAAATGAGATTTTGGAAGAATTAGATGAATGA 966 0.3602 MLHFCATTIVKDAGCDESIIPHHVFEFVNLDDLQSRCGKDVLTDVIGVITKVGPIEEKRTIGGSVDTLTLHLQDIRGNRVKVTIWDEYVKLFEQKLKENVSKDPQVTVAIFTSTIIKEFRGELSISTSRSTNIYVNIDIPESNELIQSFKDSSDEPIVGNFEVSKDGVCPKTVKTIAELLSMASLKSNTNDVYCCAATVNDILLKNGWNYVCCPHCKKKADRTTTNFSCQHCHKVVEYPMTRLRLELDVKDSTDSTIFVLFHEVAEQLTQLNLGDHATTFENENGDDLNLPPQLLKIIGCSQMMKNHDTSNENEILEELDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi593g00013 321 CDD RPA1_DBD_B_like 44 150 - -
Sebi593g00013 321 Pfam Replication protein A OB domain 37 136 IPR031657 -
Sebi593g00013 321 SUPERFAMILY Nucleic acid-binding proteins 25 150 IPR012340 -
Sebi593g00013 321 SUPERFAMILY Nucleic acid-binding proteins 173 286 IPR012340 -
Sebi593g00013 321 Pfam Replication factor-A C terminal domain 195 274 IPR013955 -
Sebi593g00013 321 Gene3D - 161 317 IPR012340 -
Sebi593g00013 321 PANTHER OS03G0429900 PROTEIN 67 306 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi593g00013 321 Gene3D - 20 156 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi593g00013 Sebi-Chr593 404000 405989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi593g00013 16 284 Core DNA Replication Machinery Family AT5G45400 26.165 1.52e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi593g00013 - - mtr:120580096 299.671