Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi593g00011 ATGCACCTCGTCGGAGAGATTCTCCTTGACGGGTGCATTTTGTTGATGAAGTCTCTCTCACTTCGTTCCCGTGCCTTCCCAAGGGATATTCTTCCAAATGGAGATAAAGAGGCTCATGCTCAAGCTATTGCTAATTTTGGATCTCAAGAGGATCCTGAGAAACTCAAGCTTATAGAAGCAGCTATAAAAGTTCAGGCTGCTTCTAGAGGCTATCTGGCTCGTCGGGAATTTCAAACACTCAAAGGTGTCATACAACTGCAAGCTATTATTCGTGGCCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAAGGAATTGTTAAATTTCAAGCATTGGCTCGTGGTTACAGTGTTAGGCGTTCTGCTATTGGGCGCGAAGTCCTGAAAATTCGCAAGAACGTATTCCATGATGTGGATGAAAAGGATACTCAATGTTCAAATTCTATTGGGGTTGTTACATCCACACAGGCAGAGAAGCTGTCAGAAAATGTCTTTGTTCACAAGGTAATAACTGCTAAGAAATGCCTATATAGAGGATAA 549 0.4226 MHLVGEILLDGCILLMKSLSLRSRAFPRDILPNGDKEAHAQAIANFGSQEDPEKLKLIEAAIKVQAASRGYLARREFQTLKGVIQLQAIIRGHLVRRQAVSALYCVKGIVKFQALARGYSVRRSAIGREVLKIRKNVFHDVDEKDTQCSNSIGVVTSTQAEKLSENVFVHKVITAKKCLYRG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi593g00011 182 SMART iq_5 56 78 IPR000048 GO:0005515
Sebi593g00011 182 SMART iq_5 79 100 IPR000048 GO:0005515
Sebi593g00011 182 SMART iq_5 104 126 IPR000048 GO:0005515
Sebi593g00011 182 Gene3D - 55 107 - -
Sebi593g00011 182 Pfam IQ calmodulin-binding motif 59 78 IPR000048 GO:0005515
Sebi593g00011 182 Pfam IQ calmodulin-binding motif 81 98 IPR000048 GO:0005515
Sebi593g00011 182 Pfam IQ calmodulin-binding motif 107 124 IPR000048 GO:0005515
Sebi593g00011 182 ProSiteProfiles IQ motif profile. 57 85 IPR000048 GO:0005515
Sebi593g00011 182 PANTHER IQ-DOMAIN 5-RELATED 39 170 - -
Sebi593g00011 182 ProSiteProfiles IQ motif profile. 81 108 IPR000048 GO:0005515
Sebi593g00011 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 124 IPR027417 -
Sebi593g00011 182 ProSiteProfiles IQ motif profile. 107 132 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi593g00011 Sebi-Chr593 380687 381926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi593g00011 53 130 IQD Protein Family AT1G18840 66.667 8.48e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi593g00011 - - tpra:123907401 197.208