Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi592g00053 ATGGCTTCAAATCATATATCAGCTGCAGGGGCAACCAATGATGCTTTATACAAAGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTTTATTATTTCCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTGTATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCAGATGATCCTCTGCCTGAACCTCCAAGATGTACTGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTTTGCCACCACTGGATATGACACAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTTCAACTGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGCGTCAACAAGTATCTTGAATCTCGAAATCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGATTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCCGAGTGGCGATCGTTAAAGGTTCAATGGGATGAACCATCATCAATTCTGCGACCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCAAATTCCCAGCCAACCCAAAGAAACAAGAGAACACGGCCACCCATTCTACCTTCAACAATGCCTGATTCTTCTCTGCAAGGCATATGGAAATCTCCAGTTGAATCTCCACCTTTCTCTTATCGTGACCCCCAACACGGACGAGATCTCTATCCATCACCCAAATTCAATTCTACTGCAAGCTTTCTTGGTTTTGGCGGGAATAGCTCTGCAGCCTCTGCTTCTAACAAGTCAATATATTGGTCTAGTAGGATGGAAAACTCAACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGTGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACGTGAGAATTCTAATGCAGAAGAAAGTCTGCCAACAGTCACTTTGTCTGGAAGGATGGGTGATGATAGGTCTGTTCCATCTTTGGATGCAGAGTCTGACCAGTATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCAGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACTCGATTTGATGGATATGAGGACCTGCTTAGGAAATTGGAAGAGATGTTCGACATCAAGGGTGAGCTCTGTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGACAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGTCTTCCAATCAATGAAGAAGGTAAACCAAGCAAACTGGATTCAGAAGCAGTAGTCAATCCCGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1932 0.4363 MASNHISAAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLESRNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRTRPPILPSTMPDSSLQGIWKSPVESPPFSYRDPQHGRDLYPSPKFNSTASFLGFGGNSSAASASNKSIYWSSRMENSTESFSPVALKESGEKRQGTGNGCRLFGIQLRENSNAEESLPTVTLSGRMGDDRSVPSLDAESDQYSEPSNVNRSDIPSVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTAEEVKKLSPKIGLPINEEGKPSKLDSEAVVNPEDQSSIVGPGC 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi592g00053 643 Gene3D - 517 608 - -
Sebi592g00053 643 Pfam AUX/IAA family 516 609 IPR033389 -
Sebi592g00053 643 ProSiteProfiles PB1 domain profile. 519 612 IPR000270 GO:0005515
Sebi592g00053 643 Gene3D - 118 223 IPR015300 -
Sebi592g00053 643 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Sebi592g00053 643 SUPERFAMILY DNA-binding pseudobarrel domain 110 250 IPR015300 -
Sebi592g00053 643 CDD B3_DNA 119 221 IPR003340 GO:0003677
Sebi592g00053 643 MobiDBLite consensus disorder prediction 504 521 - -
Sebi592g00053 643 MobiDBLite consensus disorder prediction 616 643 - -
Sebi592g00053 643 MobiDBLite consensus disorder prediction 354 386 - -
Sebi592g00053 643 Pfam Auxin response factor 247 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi592g00053 643 SUPERFAMILY CAD & PB1 domains 524 596 - -
Sebi592g00053 643 Gene3D - 284 356 - -
Sebi592g00053 643 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 608 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi592g00053 643 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Sebi592g00053 643 FunFam Auxin response factor 284 356 - -
Sebi592g00053 643 MobiDBLite consensus disorder prediction 481 521 - -
Sebi592g00053 643 MobiDBLite consensus disorder prediction 350 386 - -
Sebi592g00053 643 SMART B3_2 121 223 IPR003340 GO:0003677
Sebi592g00053 643 FunFam Auxin response factor 119 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi592g00053 Sebi-Chr592 485808 492096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi592g00053 2 637 B3 DNA Binding Superfamily AT1G59750 69.219 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi592g00053 B3 1.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi592g00053 K14486 - gmx:100793224 1179.85