Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi592g00042 ATGGGTGCAATGTGGCAATCTGTGTCCCCTAAAGTTAATGAATGGATGAAGGGTAAAGTGGTTGGATGTGGATCTTTTGGCACTGTCCATTTGGCGATGAACAAATCCACCGGTGGACTCTTCGTTGTGAAATCATCACATTCAGGGGCTGGGTGTGAGGCTTTGGATAATGAGGTCAAAATTCTAAAGACTCTAAAATCATCACCCTACATTGTCCAATGTTTAGGGACAGAGGAGGAGGAGGAAGGTGATCTCAATGTTTTTATGGAGTATATGGCAGGTGGTAGTTTGGCAGAAGTGGCACAAAAGTTTGGTGGTTCATTGCATGAAGAGGTGGTTCGGGTGTATACTAGAGAAATTCTTCATGGGTTAAAGCATCTTCACCAACGTGGTATTGTGCATTGTGACCTTAAGTGCAAGAATGTGCTTTTGGGCTCATCTGGGAACATCAAGCTAGCAGATTTTGGATGTGCAAAAAGGGTAAAGGACTTGAAGGGGAAGGGTTTGGTTTGTATTGGTGGCACTCCTCTATGGATGGCTCCTGAAGTATTGAGAAATGAGATGCTTGATTTTACTGCAGATATATGGTCTTTGGGATGTACAGTCATTGAAATGGCTACTGGTAACCCTCCTTGGGCTGAAGAGGGTTCAGATCCAAATCCAATGGCTACTTTACTCAAGATTGCACATGGAGATGGGGATGGGATACCTCAGTTTCCAACCCATTTCTCTAACCAAGGTTTGGATTTCTTGAGCAGGTGTTTGGTGAGAGAACCCAATAAGAGGAGTACAACCGAGGAGTTACTTGCTCATCCATTTGTTTCTTCAACAACTCAGAGTCAGAGTCAGAAAGAATATGCTTCCTCCCCAGCAGGTGTCTTGGAGTTTCAAGATTTTGATGAATTAGAAAGTCCACCAGGAAATGATTTCTCAATCAGAAACTCATTTTCGTACTATGATGCTCCAGAACCAATGTGGCAACTGGAGGAATTAGGGTCATCGGGGAATTGGATTACTATTAGGTGA 1026 0.4337 MGAMWQSVSPKVNEWMKGKVVGCGSFGTVHLAMNKSTGGLFVVKSSHSGAGCEALDNEVKILKTLKSSPYIVQCLGTEEEEEGDLNVFMEYMAGGSLAEVAQKFGGSLHEEVVRVYTREILHGLKHLHQRGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDLKGKGLVCIGGTPLWMAPEVLRNEMLDFTADIWSLGCTVIEMATGNPPWAEEGSDPNPMATLLKIAHGDGDGIPQFPTHFSNQGLDFLSRCLVREPNKRSTTEELLAHPFVSSTTQSQSQKEYASSPAGVLEFQDFDELESPPGNDFSIRNSFSYYDAPEPMWQLEELGSSGNWITIR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi592g00042 341 SMART serkin_6 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi592g00042 341 SUPERFAMILY Protein kinase-like (PK-like) 13 292 IPR011009 -
Sebi592g00042 341 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Sebi592g00042 341 ProSiteProfiles Protein kinase domain profile. 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi592g00042 341 CDD STKc_MAPKKK 14 274 - -
Sebi592g00042 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Sebi592g00042 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 13 289 - -
Sebi592g00042 341 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Sebi592g00042 341 Pfam Protein kinase domain 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi592g00042 Sebi-Chr592 386599 387624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi592g00042 14 341 MAP Kinase Kinase Kinase AT3G50310 37.429 2.24e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sebi592g00042 Pkinase 3.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi592g00042 - K20716 gmx:100798237 447.203