LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi592g00038	ATGTTTCCTATCTTACTGCAGATTGGGCAAGGAACTTACAGCAGTGTTTACAGGGCTCGTGATCTTGAAACAAACAAAATTGTCGCATTGAAGAAGGTTCGATTTGCTAACATGGACCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATTCTTGTGCTGCGAAGACTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTGTTTTTGAATATATGGAGCATGATCTTGCAGGCCTTGCAGCAATACCAGGCATCAAGTTTACTGAATCACAGATCAAGTGTTATATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGATCCAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTTTGCTGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATATTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAGCCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGCCTCTTGGAGCTCCTACTTGCTATAGAACCAAAAGATCGAGCAACTGCATCTTTAGCCCTTCAAAATGAGTTCTTCACAGCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAATACCCACCAAGTAAAGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCTAGAAGACAAAGAGCTGCAAATAAAGGACATGGACAAGAATCAGTTAGCAGGAGTTCAAGAGAGTCTAAAGCTAGGCCAGCACCTGATGCTAATGCTGAGTGTCAGGCATCAATAGAGAAGAGACAAGGACAGTGTAATTCTAAGTGCATTAGTGAGAAGTACAATTCTGAAGAGGATGGCGGTTGTGGCTTCCCTCTTGAACCTACAAAGTCAAGAGCACTCAATGTTTTCTCTCATTCTGGCCAGTCAATGCATCCAAGTGCATATGGATCCTCACGCAATATGAACTTAAAAGAGGAAGATGTTCTTACTGGCCCTAATCATGTCTTTACATCAAGAAACCCTGAGTTGAGAAAACAAAAATCCTACTGGCATGGCAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAACTCGAGGTAATTCACGACTTGATATGAGTGGAAACTGTAGTGTGAATTCAGAGTGGCCAGAGAATCACTTCGGTATGAGATATAGTCATCTAGCTGATGGTGAGTCCAGCCAATTGCTGGATGGACCCAAGTCTTCACGCAAGAAGGACCGTGCCATGAGCTATGCTACCAAAAGCCGCATCCACTATTCCGGACCATTGCTGCCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAGCACGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGACAAGGACAAGATAAAAAAGGCTGACAGTGAGAATAGCCTAACTGAATCACTATTTCACCATGTGAGAAATCACAGCTGA	1620	0.4265	MFPILLQIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREILVLRRLDHPNVMKLEGMITSRVSGSLYLVFEYMEHDLAGLAAIPGIKFTESQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLELLLAIEPKDRATASLALQNEFFTAKPLPCDPSTLPKYPPSKEFDAKLREEEARRQRAANKGHGQESVSRSSRESKARPAPDANAECQASIEKRQGQCNSKCISEKYNSEEDGGCGFPLEPTKSRALNVFSHSGQSMHPSAYGSSRNMNLKEEDVLTGPNHVFTSRNPELRKQKSYWHGSTAKLSRFSNSVATRGNSRLDMSGNCSVNSEWPENHFGMRYSHLADGESSQLLDGPKSSRKKDRAMSYATKSRIHYSGPLLPPEDNLEEMLKEHERQIQQAVRKARLDKDKIKKADSENSLTESLFHHVRNHS	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi592g00038	539	Gene3D	Transferase(Phosphotransferase) domain 1	143	290	-	-
	Sebi592g00038	539	Gene3D	Transferase(Phosphotransferase) domain 1	90	142	-	-
	Sebi592g00038	539	SMART	serkin_6	2	250	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi592g00038	539	FunFam	probable serine/threonine-protein kinase At1g54610	1	84	-	-
	Sebi592g00038	539	Coils	Coil	490	517	-	-
	Sebi592g00038	539	Pfam	Protein kinase domain	7	147	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi592g00038	539	Coils	Coil	268	288	-	-
	Sebi592g00038	539	PANTHER	CELL DIVISION PROTEIN KINASE	143	256	-	-
	Sebi592g00038	539	MobiDBLite	consensus disorder prediction	454	475	-	-
	Sebi592g00038	539	ProSiteProfiles	Protein kinase domain profile.	2	250	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi592g00038	539	SUPERFAMILY	Protein kinase-like (PK-like)	4	257	IPR011009	-
	Sebi592g00038	539	MobiDBLite	consensus disorder prediction	507	539	-	-
	Sebi592g00038	539	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	122	134	IPR008271	GO:0004672\|GO:0006468
	Sebi592g00038	539	Gene3D	Phosphorylase Kinase; domain 1	1	89	-	-
	Sebi592g00038	539	ProSitePatterns	Protein kinases ATP-binding region signature.	8	31	IPR017441	GO:0005524
	Sebi592g00038	539	MobiDBLite	consensus disorder prediction	275	307	-	-
	Sebi592g00038	539	MobiDBLite	consensus disorder prediction	275	315	-	-
	Sebi592g00038	539	MobiDBLite	consensus disorder prediction	461	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi592g00038	Sebi-Chr592	354283	358236	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi592g00038	2	288	Core Cell Cycle Gene Families	AT5G10270	44.675	2.21e-90	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Sebi592g00038		Pkinase	2e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi592g00038	-		-	gmx:100805055	833.558