Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi592g00016 ATGGGACTAAACACTAAGGAAGGAGCAAAATTTACTCACCCGTTGCATGAAAACATCAAAGGGATAAAGAAGTACCCGAGCAAGGTCATCAAGAAGGACTCTGCTAAGAAGACAGCCAAGAAATCGAGGGTCAAGGCTTTCGTGAAGTTGGTTAACTACCAGCACCTCATGCCAACTCGTTACACCCTCGATGTCGATCTTAAGGACGCTGTTGCCCCTGATGTCCTCCACTCCAAGGACAAGAAGGTCGCTGCCCTCAAAGAGACCAAGAAGCGCTTTGAGGACAGGTTTAAGACCGGCAAGAACAGGTGGTTCTTCACCAAACTTCGATTCTAA 336 0.4762 MGLNTKEGAKFTHPLHENIKGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVAPDVLHSKDKKVAALKETKKRFEDRFKTGKNRWFFTKLRF 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi592g00016 111 Coils Coil 76 96 - -
Sebi592g00016 111 PANTHER 60S RIBOSOMAL PROTEIN L27 18 111 IPR001141 GO:0003735|GO:0005840|GO:0006412
Sebi592g00016 111 Pfam Ribosomal L27e protein family 28 111 IPR001141 GO:0003735|GO:0005840|GO:0006412
Sebi592g00016 111 SUPERFAMILY Translation proteins SH3-like domain 28 111 IPR008991 -
Sebi592g00016 111 Gene3D - 3 111 IPR038655 -
Sebi592g00016 111 ProSitePatterns Ribosomal protein L27e signature. 100 111 IPR018262 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi592g00016 Sebi-Chr592 136778 137820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi592g00016 16 111 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 78.125 2.90e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi592g00016 K02901 - gmx:100527246 163.31