Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi592g00013 ATGCATGGTGGTGAGGGTAGCAACACCCAAGAAACTGGGAAGAATGACGACTTGATGCAATTGAAGGTGTTCCAAGGTGTTGCAAGAGAAAAGAAGGGGCAAATCATCAACAATGCGAGGGAAAAAGAGACTGAGATTTTTGACGCCATGAGAAGTGACATGGCGAATGAACCTTCTGACAAGGGGCTCATAGAGATGATGGCTATCAGCGGACGATGGATGAGAGCAGTAAATGGGGTTGGAGATATCGAACCAGAAGTTGCAGAAGGTGAGGGGGGCTGCAGCAGAGCGACGATCAAGGATGTTAGAAACGAAATTGGAAAATGTAGAGTAGTAACTGAAGGAGTCACTGTTGATGCTAAGGACCGGAAGGGACTCCCAAAGGTCCTTCCAGCTTCTGTTGATAACACTGCTTTGAATTGCTTCCCTCGACTCCAAAAACGAAAGAACGTGTTGAACAATATCATCGGTTGGGAACGAATGGCCGTGTCACTGTGGAGAGGTCGCGCTGCTTCGTCGGCGTTCAACTTGTTCACCAATGCTCTTCGCCGTTTCTCTTCCGAGGTTACAAAAACCATTCCTCGCGACGCGCGTGAGAGTATGATGTATTCTGACATAAACTCACAGATTGGGAGTTGCATGCCTCTTTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAAACCAGGGCAAGGTGGGAAGCTGGTGCGAGCAGCTGGAACAAATGCGAAGATCTTGAAAGAGCCAACGTCCGCATACTGTTTAATCCAACTTCCCTCTGGTGTTAAAAAATTGATTGATTCTCGATGCAGGGCCACCGTTGGCACCGTCTCTAATCCAACCCATGGAGATCGCAAGCTTAGAAAGGCTGGACATAGCCGATGGCTTGGTCGAAGACCGGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCACGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGGCGATGGGGGCGAGGATCTCGCACTCCTTGGGGCAAGCCAACTAAGAGTGGCTTCAAGACTGGTCCTCTCAAGCGCAGAAGGTAG 1068 0.4925 MHGGEGSNTQETGKNDDLMQLKVFQGVAREKKGQIINNAREKETEIFDAMRSDMANEPSDKGLIEMMAISGRWMRAVNGVGDIEPEVAEGEGGCSRATIKDVRNEIGKCRVVTEGVTVDAKDRKGLPKVLPASVDNTALNCFPRLQKRKNVLNNIIGWERMAVSLWRGRAASSAFNLFTNALRRFSSEVTKTIPRDARESMMYSDINSQIGSCMPLSAMRIGTIIHNIELKPGQGGKLVRAAGTNAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGRGSRTPWGKPTKSGFKTGPLKRRR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi592g00013 355 FunFam 50S ribosomal protein L2 281 355 - -
Sebi592g00013 355 Pfam Ribosomal Proteins L2, C-terminal domain 210 339 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi592g00013 355 SUPERFAMILY Translation proteins SH3-like domain 210 344 IPR008991 -
Sebi592g00013 355 MobiDBLite consensus disorder prediction 309 355 - -
Sebi592g00013 355 PANTHER RIBOSOMAL PROTEIN L2 203 354 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi592g00013 355 Gene3D - 204 280 IPR014722 -
Sebi592g00013 355 SMART Ribosomal_L2_C_2 208 341 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi592g00013 355 Gene3D Ribosomal protein L2, domain 3 281 355 IPR014726 -
Sebi592g00013 355 ProSitePatterns Ribosomal protein L2 signature. 303 314 IPR022671 GO:0003735|GO:0005840|GO:0006412
Sebi592g00013 355 FunFam 60S ribosomal protein L2, mitochondrial 204 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi592g00013 Sebi-Chr592 104881 106393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi592g00013 207 320 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 4.93e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi592g00013 - - gmx:100792418 336.65