Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi592g00008 ATGGATAATGAGGGTCACATTCCCCCAAAGCCTCCATGCTGCAAGGGTTCTGAAAGTGAAGAAGCAGTTTTCTTGCACGGTGACTTGGATCTGTGGATATTAGAAGCAAAGTCTCTTCCCAATTTGGATTTTCCGACGGAAGCAGTGCGGAAATATTTCACCATTGGCAACAGTCGCTCGGGACTGAAGACTCACTCTGGCAAATACAAAATGATAACCAGTGATCCTTACGTCTCTGTCTGCCTCGCTGGTGCCACCGTTGCTCAAACCAGAGTCATTTCCAATTGTGAGAACCCTTTATGGGATGAGCATTTTCTTGTCCCTGTCGCTCACCCTGCTCGCAAATTGGAGTTCCTTGTCAAAGACGACGATATTCTTGGAGCCCAACTCATTGGTGTGGTCGAAATTTCTGTCAACAAGATTCTCTCCGGAAATTTTATCAATGATTGGTTTCCCATCATTGGCCATTATGTAAGCTACTTGAAACCTTATCCTGAGCTGCATGTATATGTTCAGTTTAGGCCTGTTACTGTTGGAGTGAACCCTCCTTTTCCAGAATCAGAGGATTATGAGGATCTGGCTGTTCCTAATACATATTTTCCTGTTCGAAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATGTACCAGATGATGATAAGCTACCTGAAATTCCACTTGAGGGTGGAAAGCTATTTCAGCATGGTAAATGTTGGGAGGAGATATGCCATGCCATTTCCGAAGCTCACCACCTGATTTATATTATAGGGTGGTCAGTTTACCACCCAGTGAAGCTTATCAGAGAGCCAACAAAACCTTTGCCCTCTGGTGGAGACCTTTCACTTGGAGAGTTGTTGAAATACAAGTCACAAGAAGGGGTCCGTGTGGTTATGCTCATTTGGGATGACAAAACTTCCCATGACACTTTTCTTTTGAAAACAGAAGGTGTCATGCAAACTCATGATGAAGAAACTAAAAAGTATTTTAAACACTCTACTGTTAACTGCGTACTTGCTCCACGTTATGCAAGCAATAAGCTCAGTATTGTCAAGCAAAAGGCATACACTCAAGCTTCTGGGAATAATAGGAAAATAACTGCTTTTATTGGTGGTTTGGATCTCTGTGATGGCAGATATGATACTCCTGACCATAGGCTTTTTGACGATCTAGATACTGTCTTTGAAAATGATTTTCGCAATCCTACATTTCCAACCAATTCGCACGGACCAAGAGAGCCATGGCATGACTTGCATTGCAGAGTTGAGGGTCCGGCTGCGTATGATATATTGACCAATTTTGAGCAAAGATGGAAGAAAGCCAAAAAATGGCACGACTTCAGGCTCAAAAGGGTGACAAATTGGCATGATGATGCTTTGCTAAGCCTAGAGCGAATTTCATGGATTCTCACTCCATCTTCTGGTCCTGATGGTGATAAAGCTGTTCATGTAACTAATGAGGATGATCCTGAGAGTTGGCATGTGCAGGTATTTCGGTCAATAGATTCAGGATCGGTGAAGGGTTTTCCAAAGGATGTTCAAGAAGCAAAGGCTCAGAATCTTTTTTGTGGAAAGAATTTGAAAGTAGATAAAAGCATCCATGCTGCTTATGTGAAAGCAATAAGATCAGCTCAAAACTTCATATACATTGAGAATCAGTATTTTCTGGGATCCTCATATCACTGGACTTCACACAAAAATGCAGGTGCAAATCACTTGATTCCCACGGAATTGGCTTTAAAAATTGCCAACAAAATCAGTGCCAATGAACGTTTTTCTGTGTATATAGTTATACCAATGTGGCCAGAGGGGGTTCCCACCAGTGCTTCTGTTCAAGAAATTTTGTTCTGGCAGGGACAGACTATGTCTATGATGTACAAACTTGTTGCCAATGCGCTTAAAAAGGCAGGTCTTTCCAGTGAGTATCATCCACAAGATTATCTCAACTTTTACTGTCTTGGAAAGCGCGAACCTCAATCCTCAGAAAGTCCATCAACACCACCATTTCACCCATTGGAAAACCGTGGTTTGGTTTCCGTTAAAAAGTCCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGAATACGTAATCATGGGATCTGCAAATATTAACCAGAGATCCTTGGATGGTTCAAGAGACACAGAGATAGCTATTGGTGCTTATCAGCCAAAGTATACATGGAAAGAAAAGAATTCTCATCCATATGGCCAGGTATATGGTTACCGAATGTCACTATGGGCTGAGCACCTTGGCAGTCTTGATGAAACTTTTGCAGAACCACACAGCCTAGAATGTGTTAGATATGTCAACAACATAGCCAGACAAAACTGGGACGTCTACATATCTGAGGAAGGGAAGGAGATGAGGGGACATTTGCTGCCGTATCCAATTCAGGTCAGCCAGGATGGAAAAGTTAGTCCATTGCCAGACTACGAATCCTTTCCAGATGTTGGTGGTAAAGTTCTTGGTTCGCCCAATTCTCTTCCGGATGCACTAACCACGTGA 2520 0.4242 MDNEGHIPPKPPCCKGSESEEAVFLHGDLDLWILEAKSLPNLDFPTEAVRKYFTIGNSRSGLKTHSGKYKMITSDPYVSVCLAGATVAQTRVISNCENPLWDEHFLVPVAHPARKLEFLVKDDDILGAQLIGVVEISVNKILSGNFINDWFPIIGHYVSYLKPYPELHVYVQFRPVTVGVNPPFPESEDYEDLAVPNTYFPVRKGGSVTLYQDAHVPDDDKLPEIPLEGGKLFQHGKCWEEICHAISEAHHLIYIIGWSVYHPVKLIREPTKPLPSGGDLSLGELLKYKSQEGVRVVMLIWDDKTSHDTFLLKTEGVMQTHDEETKKYFKHSTVNCVLAPRYASNKLSIVKQKAYTQASGNNRKITAFIGGLDLCDGRYDTPDHRLFDDLDTVFENDFRNPTFPTNSHGPREPWHDLHCRVEGPAAYDILTNFEQRWKKAKKWHDFRLKRVTNWHDDALLSLERISWILTPSSGPDGDKAVHVTNEDDPESWHVQVFRSIDSGSVKGFPKDVQEAKAQNLFCGKNLKVDKSIHAAYVKAIRSAQNFIYIENQYFLGSSYHWTSHKNAGANHLIPTELALKIANKISANERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMYKLVANALKKAGLSSEYHPQDYLNFYCLGKREPQSSESPSTPPFHPLENRGLVSVKKSRRFMIYVHAKGMIVDDEYVIMGSANINQRSLDGSRDTEIAIGAYQPKYTWKEKNSHPYGQVYGYRMSLWAEHLGSLDETFAEPHSLECVRYVNNIARQNWDVYISEEGKEMRGHLLPYPIQVSQDGKVSPLPDYESFPDVGGKVLGSPNSLPDALTT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi592g00008 839 Gene3D Endonuclease Chain A 480 737 - -
Sebi592g00008 839 ProSiteProfiles C2 domain profile. 10 151 IPR000008 -
Sebi592g00008 839 SMART pld_4 685 712 IPR001736 GO:0003824
Sebi592g00008 839 SMART C2_3c 28 150 IPR000008 -
Sebi592g00008 839 SUPERFAMILY Phospholipase D/nuclease 200 445 - -
Sebi592g00008 839 SUPERFAMILY Phospholipase D/nuclease 514 770 - -
Sebi592g00008 839 Pfam PLD-like domain 539 723 IPR025202 -
Sebi592g00008 839 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 685 712 IPR001736 GO:0003824
Sebi592g00008 839 PANTHER PHOSPHOLIPASE D 19 828 IPR015679 -
Sebi592g00008 839 Pfam Phospholipase D C terminal 759 829 IPR024632 -
Sebi592g00008 839 Gene3D Endonuclease Chain A 231 458 - -
Sebi592g00008 839 FunFam Phospholipase D delta 229 458 - -
Sebi592g00008 839 CDD C2_plant_PLD 22 174 - -
Sebi592g00008 839 Pfam C2 domain 27 153 IPR000008 -
Sebi592g00008 839 Gene3D C2 domain 23 174 IPR035892 -
Sebi592g00008 839 PIRSF PLD_plant 14 839 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sebi592g00008 839 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 176 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi592g00008 Sebi-Chr592 69096 75386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi592g00008 16 838 Phospholipase D Gene Family (Wang group) AT2G42010 52.468 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi592g00008 K01115 - gmx:100779740 1343.18