Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi591g00008 ATGTGGTTAGGGAGGTTTTTCGAAGTTCTTATTGGTGCTAGACCAGAGCCGTTATGGAGGCTGCTCAGTAAAATTGGAATCCTTTATGCCCTGGAGCCACTTTTAACTGTTATTTTTGTTATAAACATGAACATGGTTTGGGAGAAAGTTATGTCAACACTGAGAGCTCAGATCTTTGGAAGAATACTGATTCAGAAGGTCGAGTTTTTTGACAAATACAAGGTCATTGGAACAATATTCATACTTTTTTCTTTATCCCCTCAACTGGCACCAATTCTGGGTGTTCTGATGCTTGCAGTTTCCATTTCAATTGCTGTTTACAAGAGATCAACTTTCCCTGTTTTCAAAGCACATGGGTTGGCCCAAGCAGCTATATCTGATTGTGTAACAGAAACATTTTCTGCTATTCGAACAGTAAGATCTTTTGGCGGAGAAAAGCGCCAAATGTTTACATTTGCTAACCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCTTTAATTGCATTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTGAACTCTCTGTTGGAACTATGGCATCGTTTATTGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGCGAAACATTTGCTGCTATTGAGAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGATGAATCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCACTGAATGATGAAAACTATAAATTGTTTTTCTCTAATAGTTCTGCTGAGAAAAACCAAAAAAATTATTTGCATTACATGTCAGCACTAAAATCATCTAGCAATTTGTTTAGCTTAGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTAAGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCAGGCAAAAGTACAATAGTACAGCTATTGTCTCGTTTTTATGAGGATCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATCGCATATGGGCTTCCAGATGATGATGTTTCTAAAGAGGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGATATGACACACTTGTTGGTGAGCGTGGAGGCCTACTGAGTGGAGGACAGAGGCAGAGAATTGCCATTGCTCGAGCTCTGTTGAAAAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCAGTCAGTGAGCGCTTGGTCCAAAATGCTCTAAACCATCTGATGAAGGGGAGGACAACATTAGTAATAGCTCATCGATTAAGCACTGTCCAAAATGCCTATCAAATTGCGCTCTGTTCTGATGGGAGGATTGCAGAACTAGGCACCCATTTTGAGCTATTGGCTAAGAAGGGACAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAATAA 1572 0.3982 MWLGRFFEVLIGARPEPLWRLLSKIGILYALEPLLTVIFVINMNMVWEKVMSTLRAQIFGRILIQKVEFFDKYKVIGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTFPVFKAHGLAQAAISDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRETFAAIERINSVLSGVQVDESLAYGLERELKQKALNDENYKLFFSNSSAEKNQKNYLHYMSALKSSSNLFSLAWSGDVCLEDVYFSYPLRPDVEILSGLNLRLKCGTVTALVGPSGAGKSTIVQLLSRFYEDPVLFSVSVGENIAYGLPDDDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQNALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIAELGTHFELLAKKGQYASLVGTQRLAFE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi591g00008 523 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 232 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi591g00008 523 Gene3D - 363 520 IPR027417 -
Sebi591g00008 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 518 IPR027417 -
Sebi591g00008 523 FunFam ABC transporter B family member 28 362 520 - -
Sebi591g00008 523 Pfam ABC transporter transmembrane region 75 219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi591g00008 523 SUPERFAMILY ABC transporter transmembrane region 5 245 IPR036640 GO:0005524|GO:0016020
Sebi591g00008 523 Gene3D ABC transporter type 1, transmembrane domain 75 245 IPR036640 GO:0005524|GO:0016020
Sebi591g00008 523 ProSitePatterns ABC transporters family signature. 420 434 IPR017871 GO:0005524|GO:0016887
Sebi591g00008 523 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 309 517 IPR003439 GO:0005524
Sebi591g00008 523 Gene3D - 305 362 IPR027417 -
Sebi591g00008 523 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 4 75 IPR039421 -
Sebi591g00008 523 Gene3D ABC transporter type 1, transmembrane domain 1 74 IPR036640 GO:0005524|GO:0016020
Sebi591g00008 523 SMART AAA_5 336 480 IPR003593 GO:0016887
Sebi591g00008 523 Pfam ABC transporter 327 448 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi591g00008 Sebi-Chr591 441337 446031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi591g00008 306 523 Calmodulin-binding Proteins AT2G36910 50.000 1.22e-64 226