Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi590g00025 ATGGACCTTCTGCAAAGAGTTGAGGTGATCAAGTACACTCCACCTTTAGAGAAGCAAACAAAAACTACAGAACCTTCTGGAGGGGCATATGGTTATGCATCATCTGATCGCCCCTATGCATGTCCTCATGAAGGATGTGAAAAAGCTTACATCCATGAATACGAGCTTAGACTCCATTTGAAGAGGGAACATCCGGGGCATATGTCTGATGAAAATACCGAGCATTCTCAGGTTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTACGGTGGGAAATGGTCAAATGGTAAGATTCAGAAGCAAAGTAGTGTCAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGGGTCCACGGCCACTCTAACTGTGATTAACAAACCTTTGCCTGTGAAAGATGGAACATTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGATCGAAATAATGTTGAAGATGGTTAG 486 0.4239 MDLLQRVEVIKYTPPLEKQTKTTEPSGGAYGYASSDRPYACPHEGCEKAYIHEYELRLHLKREHPGHMSDENTEHSQVNADNEMDEASDQDAYGGKWSNGKIQKQSSVKPNLKLPPSKIAKRKGSTATLTVINKPLPVKDGTFDEEDSEETEEDRNNVEDG 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi590g00025 161 SMART c2h2final6 39 64 IPR013087 -
Sebi590g00025 161 MobiDBLite consensus disorder prediction 143 161 - -
Sebi590g00025 161 SUPERFAMILY beta-beta-alpha zinc fingers 34 62 IPR036236 -
Sebi590g00025 161 FunFam Zinc finger transcription factor YY1 14 81 - -
Sebi590g00025 161 ProSitePatterns Zinc finger C2H2 type domain signature. 41 64 IPR013087 -
Sebi590g00025 161 Gene3D Classic Zinc Finger 16 83 - -
Sebi590g00025 161 MobiDBLite consensus disorder prediction 62 161 - -
Sebi590g00025 161 MobiDBLite consensus disorder prediction 16 37 - -
Sebi590g00025 161 MobiDBLite consensus disorder prediction 62 82 - -
Sebi590g00025 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi590g00025 Sebi-Chr590 313820 314980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi590g00025 8 139 C2H2 Transcription Factor Family AT4G06634 51.748 6.47e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi590g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi590g00025 - - gmx:100811480 243.817