Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi590g00021 | ATGGGTCGCGTTCGCACCAAGACAGTGAAGAAGTCGTCGAGGCAGGTGATTGAGAGGTACTACTCTCGAATGACCCTGGACTTCCACACAAACAAGAAGGTCCTTGAGGAGGTGGCTCTCATTCCCTCCAAGAGGCTCCGTAACAAGATCGCAGGGTTCTCCACCCATCTCATGAAGCGGATCCAGAAGGGACCAGTGCGTGGTATCTCCCTGAAGCTGCAGGAGGAGGAGCGTGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAGGACCGAACAGATCGAAGTCGACAAGGAGACACTCGACATGCTTGCCGCCCTTGGCATGTCTGAAATCCCTGGCGTCGTTCAGGTCGACCCTGTCCCCGTCCAGCAGATTCCCTTCGGTCGTGGCGGTGCTGGCCGGAGGGCGATGGGGTTGGACAGTGGCACAGTGCTGGAGGAGGGTATTTTACAGGGTATGGTGGCCACTGGTGAAATGAATGGCCGAGAGGTTGAGTTGGCAGTTCTGGTTCAGCTTTTCTTGCCTTCTATTGGGACTAAGTTTATGGGTGCTTGCTCTGGGTTGGCAATGCCTTGTTGCACAAGGGATGTTTTAAACGTGAATGCCATGGTAGAGTTTCTAGAGAATGATTTGATTGGAGAATTGGGTGGAACATTGGTGCTTGAGAGGAGCCATGGTAGGGGACTAGGGAATGACTTGATTGTGGAGTATATTGGATGGAACCGTGATGCCTGA | 744 | 0.5403 | MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTEQIEVDKETLDMLAALGMSEIPGVVQVDPVPVQQIPFGRGGAGRRAMGLDSGTVLEEGILQGMVATGEMNGREVELAVLVQLFLPSIGTKFMGACSGLAMPCCTRDVLNVNAMVEFLENDLIGELGGTLVLERSHGRGLGNDLIVEYIGWNRDA | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi590g00021 | 247 | PANTHER | 40S RIBOSOMAL PROTEIN S17 | 1 | 123 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Sebi590g00021 | 247 | FunFam | 40S ribosomal protein S17 | 1 | 62 | - | - | |
| Sebi590g00021 | 247 | Gene3D | - | 1 | 62 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Sebi590g00021 | 247 | Hamap | 30S ribosomal protein S17e [rps17e]. | 1 | 63 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Sebi590g00021 | 247 | SUPERFAMILY | Rps17e-like | 1 | 62 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Sebi590g00021 | 247 | Pfam | Ribosomal S17 | 1 | 120 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Sebi590g00021 | 247 | ProSitePatterns | Ribosomal protein S17e signature. | 41 | 56 | IPR018273 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi590g00021 | Sebi-Chr590 | 234599 | 236298 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi590g00021 | 1 | 138 | Cytoplasmic Ribosomal Protein Gene Family | AT5G04800 | 79.577 | 3.48e-76 | 225 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi590g00021 | K02962 | - | gmx:100785402 | 242.276 |