LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi58g00119	ATGGTCATAAGGCAACCATCACTGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTGTTGGTTAACTGGAAGAGCGAGCTTTATAATTGGTTACCATCTGTGGCATGCATTTTTTATGTTGGAGGGAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTTGTGCCATGAAATTTAATATCCTTGTGACAACTTATGAGTTCATTATGTATGACCGATCAAAGCTTCGAAAATTGATTGGAACACGTGATCTTGATAGGTACCGTTGTCAAAGACGCCTGCTTTTGACAGGAACGCCGTTACAGAATGATTTGAAGGAACTCTGGTCACTTCTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTAATGATTGGTTCTCAAAACCATTTCAAAAAGAAGGTCCTACTCAAAATGCAGAGGATGATTGGCTTGAGACGGAGAAGAAAGTTATCATAATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTAAGGCGTCGGGTTGAAGATGTTGAAGGCTCGCTACCACCAAAGGTCTCCATAGTTTTAAGATGTAAAATGTCACCTGTCCAGAGTGCCATTTATGACTGGGTCAAAGCAACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGTAGGGTTCAAAAGAATCCATCATACCAGGTGAAGCAATATAAAACTTTAAACAACAGGTGCATGGAGTTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAATGACTTGTCTAAAGATTTCATTGTAAAGTCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACATCGAGTTCTCCTGTTCAGTACCATGACAAAACTTCTAGACATCTTGGAAGAATACTTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTCAGTATTCGAGCAGCTGGAAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAAGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCAGTTGTTGACAAAATCTCTAGTCATCAGAAGGAGGATGAACGGAGAAGTGGAGGCACTGTTGACATGGAGGATGAACTTGCAGGTAAGGATCGCTACATCGGATCCATTGAGAGCCTCATAAGGAACAATATTCAGCAATATAAGATAGATATGGCTGATGAAGTCATTAATGCTGGACGATTCGATCAAAGAACAACACATGAAGAAAGGCGTTTAACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCACTGCAGGAGGTAAATCGCATGATTGCCAGGAGTAAAGAGGAAGTTGAACTGTTTGATCAAATGGACGATGAACTGGATTGGATTGAGGAGATGACACGTTATGATCATGTGCCTAAGTGGCTTCGTGCCAATACAAGAGAAGTAAATGCTGCTATTGCTGCTTTATCAAAAAGGCCATCAAAGAATACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAAGTTGGTTCTGAAAGAAGAAGAGGACGACCCAAGGGAAAGAAGCATCTTAGTTATAAAGAGTTGGATGATGAAAATTTGGAATACTCTGAAGCAAGCTCTGAGGATAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTACAGTGGGGGCTGA	2025	0.4054	MVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVACIFYVGGKDHRSKLFSQEVCAMKFNILVTTYEFIMYDRSKLRKLIGTRDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSPVQSAIYDWVKATGTLRLDPEDEKRRVQKNPSYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDERRSGGTVDMEDELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEVELFDQMDDELDWIEEMTRYDHVPKWLRANTREVNAAIAALSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHLSYKELDDENLEYSEASSEDRNGYAHEEGEIGEFEDDGYSGG	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi58g00119	674	CDD	SF2_C_SNF	322	447	-	-
	Sebi58g00119	674	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	26	173	IPR014001	-
	Sebi58g00119	674	Pfam	SNF2-related domain	17	126	IPR000330	GO:0005524\|GO:0140658
	Sebi58g00119	674	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	10	226	IPR027417	-
	Sebi58g00119	674	MobiDBLite	consensus disorder prediction	632	661	-	-
	Sebi58g00119	674	Gene3D	-	236	559	IPR027417	-
	Sebi58g00119	674	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	229	568	IPR027417	-
	Sebi58g00119	674	SMART	helicmild6	353	437	IPR001650	-
	Sebi58g00119	674	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	327	504	IPR001650	-
	Sebi58g00119	674	Gene3D	-	137	225	IPR038718	-
	Sebi58g00119	674	PANTHER	SNF2/RAD54 HELICASE FAMILY	3	639	-	-
	Sebi58g00119	674	Gene3D	-	1	136	IPR038718	-
	Sebi58g00119	674	MobiDBLite	consensus disorder prediction	606	674	-	-
	Sebi58g00119	674	Pfam	SNF2-related domain	141	303	IPR000330	GO:0005524\|GO:0140658
	Sebi58g00119	674	FunFam	ATP-dependent helicase BRM	236	446	-	-
	Sebi58g00119	674	SMART	ultradead3	10	181	IPR014001	-
	Sebi58g00119	674	Pfam	Helicase conserved C-terminal domain	325	437	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi58g00119	Sebi-Chr58	2117331	2121031	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi58g00119	35	462	RAD5 or RAD16-like Gene Family	AT1G02670	24.758	1.03e-21	98.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Sebi58g00119		SNF2_N	3e-30	CL0023