Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00116 ATGGCAGGGTGGTCGCTGCTCGACGTAGGAGTTAGCAGTGTCGTTGTTGGAGTGCAATACGACCAGGTTCGGTGCCGTTTTGAGGTGTTTCTTGCTGAGTTTTTGAGGGAGATCTGTCCCACGAGTCGGAGTTGCTTCCGTCCTTTTCCTCCAATGCTGGGTGATGGGCAGCGCGTGGATTTGTTCAAGCTGTTTACGGTGGTGAAGGGGAAAGGAGGGTACGACGCCGTTTGCAATGGAAAGTTGTGGGATTTGGTTGGGGAAGAATCTGGTTTGGGTGTGAGTGTCGGTTCGTCTGTGAAACTGGTTTATAGTAAATACTTGAGTGTTTTAGATGCATGGGTGAAGAAAGTTGCTGATAGTAAGGTACCTTTTGAGTGTGGTTTGGTGGATGATAGGGTTAAGTTCGCTAGGCGTTTGATGGAGTTGCAGGCTGAGGTGAAAGGGTTGTTGTCTGATCGTGCTGCTGATGAAAAGGAGTTAAAGGGTGAATCTGATGATGACTACCGGGGTGTGAGGAAGTTGTGTGGTACTAATGAGGTGAAAGGTTTGAATTTGGAATCTAATGGAGACCAAAAAGTCCAGAATGGAGGATGTTCTGATTCGGATATGCCAGACCGTGAGATGATGAATGAATCTGTTCTTGGAAACTTGTGTGAGGGTAATGATGCAATGGAAGAGTTTGATGGAGGGAAGGTGTCTGCGGAGTCTGTGTTGGTGGATGTATCTGATGCAATGAACAGCAGCAGAAGCACACCTGGATTGTCGATTGAAGGCAACAATGGTGGTGATGATAATAACGGTGTCTTGGTATTGGATTCTTCTGGTGGTGATGGAGGGAGTTCTGGTTATAAGAGGAAGAGAGAGTCTGTGTTTGATTTGCTGAGTTGGGTTACTCGCGTTGCGAAGGATCCTTGTGATCCTGCAGTTGGTTCCATGCCTGAAAAGTCCAAGTGGAAGTCTTATGGTAATCAAGAGGTCTGGAAGCAGGTTTTGCTGTTTCGTGAAGCTGTGTTTTTCAAAAAGCGTTTTGAGTCGAGCAGTGAACAGCATAATTGGCAGAGTCAGAAGATGCATCCTTGCATGTGTACGAAGCTCTTCAGAATCATCGTAGGAACGGAAGGAGATTCAGACAGACAGACACCAAGTCCTCATGCTGCAGATCGAGGTGAGAAACAGTCCGTGATTCCTCCAATTCACATTCAGGTGTTGAGAGATGTGACCAGTGGGACCATACGTATCCCTGTGGGGCCAATTCATCAAGCTTATGTACCACAGTGGATGGCATGA 1290 0.4705 MAGWSLLDVGVSSVVVGVQYDQVRCRFEVFLAEFLREICPTSRSCFRPFPPMLGDGQRVDLFKLFTVVKGKGGYDAVCNGKLWDLVGEESGLGVSVGSSVKLVYSKYLSVLDAWVKKVADSKVPFECGLVDDRVKFARRLMELQAEVKGLLSDRAADEKELKGESDDDYRGVRKLCGTNEVKGLNLESNGDQKVQNGGCSDSDMPDREMMNESVLGNLCEGNDAMEEFDGGKVSAESVLVDVSDAMNSSRSTPGLSIEGNNGGDDNNGVLVLDSSGGDGGSSGYKRKRESVFDLLSWVTRVAKDPCDPAVGSMPEKSKWKSYGNQEVWKQVLLFREAVFFKKRFESSSEQHNWQSQKMHPCMCTKLFRIIVGTEGDSDRQTPSPHAADRGEKQSVIPPIHIQVLRDVTSGTIRIPVGPIHQAYVPQWMA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00116 429 SMART bright_3 22 117 IPR001606 GO:0003677
Sebi58g00116 429 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 22 427 - -
Sebi58g00116 429 SMART ARID_2 18 112 - -
Sebi58g00116 429 SUPERFAMILY ARID-like 26 121 IPR036431 GO:0003677
Sebi58g00116 429 Gene3D - 17 124 IPR036431 GO:0003677
Sebi58g00116 429 CDD ARID 26 108 - -
Sebi58g00116 429 ProSiteProfiles ARID domain profile. 21 116 IPR001606 GO:0003677
Sebi58g00116 429 Coils Coil 140 160 - -
Sebi58g00116 429 Pfam ARID/BRIGHT DNA binding domain 43 109 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00116 Sebi-Chr58 2084648 2088115 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi58g00116 ARID 2.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00116 - - gsj:114390964 360.918