Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00115 ATGATTGTGTTCACTGTTCTCTTTGGATTTAAGTACTTCTTGGAAAATTACCCGCCAACTTTAGAAGAGCGCGAGTCTTTAACCTCTAATGATGGTGCGGTTACTTCACTCACTGCGGGATTACTGGTAGGCTTGAACCTGGAAGCATCCATACCTGATACTTACCAGCCCCCTCCTGCACCTCTGCCTTATGATACGGTCCTGGGAGGTCCAGCATCAACAGACTCTGAGTCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACTTTAATTACATGTGAAGATCTTGAAGAATCTGATTGTAAAGCTCAAGCTAAATCTGCACCTATATCTCCAAGGAAGGAAGAGCTGTCAAAATCAAATGAATCTCATGCATCACTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTATCACCTGTCTTGTATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGAGATGATATTTGACCAAGCACTGGACTAG 561 0.4207 MIVFTVLFGFKYFLENYPPTLEERESLTSNDGAVTSLTAGLLVGLNLEASIPDTYQPPPAPLPYDTVLGGPASTDSESGRETVSGSSFETLITCEDLEESDCKAQAKSAPISPRKEELSKSNESHASLTEEEDVCPICLEEYDVENPKTLTKCEHHYHLSCILEWMERSDSCPICDQEMIFDQALD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00115 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 111 180 - -
Sebi58g00115 186 MobiDBLite consensus disorder prediction 104 127 - -
Sebi58g00115 186 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Sebi58g00115 186 Pfam Ring finger domain 134 175 IPR001841 -
Sebi58g00115 186 SMART ring_2 135 175 IPR001841 -
Sebi58g00115 186 MobiDBLite consensus disorder prediction 113 127 - -
Sebi58g00115 186 SUPERFAMILY RING/U-box 128 182 - -
Sebi58g00115 186 CDD RING-H2_AIRP1-like 131 179 - -
Sebi58g00115 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 184 IPR013083 -
Sebi58g00115 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 33 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00115 Sebi-Chr58 2053165 2054155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00115 18 186 C3H Transcription Factor Family AT4G00335 57.396 9.97e-64 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00115 - - gmx:100792561 302.367