Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00088 ATGGTGGACGGCGGCGAATTCGCCGACACCATTTGTTCGATCTGCTACGAAGGTCTCAAGCCCATTGTAGAAGATCTCCAATCCATCTCCATATGCGGCCATGTCTTCCACGAGCTCTGTCTGCAGCAATGGTTCGAGTACTGTTCGAGATCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAATTGCAGGGCCAACGACGCGTGCCGGCTTTATTTTCAGTCGGTTGGAGATGTGAGCGACACTATTCTCTCTCAGAAGCACGTTGATTCTGAGGAAGATTCTGGGGTTCTGCGTAGGGAAGTGAAAAGATTGGAGGTGAAAGTTTCGGGGCTTGGTTCGCTTTGTGCTTGCAAGGAGCAGGCAAAAATAGAAATAGCATTGAAGAATGAGGCCTTGAAACAAAAAACATCCTTTCAATACCAGTTTAATATGAAATCAGAGGAGCTTGAGAAGTCAACTTCGGAGTGTTTTAGATTAAAGGATAAAAATATGGCTTTGGCTAAAGAAGTTGCTGCATTAAAATTGTGA 531 0.4557 MVDGGEFADTICSICYEGLKPIVEDLQSISICGHVFHELCLQQWFEYCSRSKKHTCPVCKQNCRANDACRLYFQSVGDVSDTILSQKHVDSEEDSGVLRREVKRLEVKVSGLGSLCACKEQAKIEIALKNEALKQKTSFQYQFNMKSEELEKSTSECFRLKDKNMALAKEVAALKL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00088 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Sebi58g00088 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 176 - -
Sebi58g00088 176 Pfam Ring finger domain 11 60 IPR001841 -
Sebi58g00088 176 SUPERFAMILY RING/U-box 9 65 - -
Sebi58g00088 176 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Sebi58g00088 176 SMART ring_2 12 59 IPR001841 -
Sebi58g00088 176 CDD RING-H2 12 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00088 Sebi-Chr58 1645996 1647493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00088 1 176 C3H Transcription Factor Family AT4G01270 50.262 2.95e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00088 K11985 - gmx:100812811 269.626