Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00065 ATGAACACTCAGTCGCAGCAGCAACAACAACAAGGCCAATACAAAAAACGAGAATTCAAGGAAGAAGAAGAAAACCGGTTGCTACAAAGCGATTGTGAGACAATACCATTATCCTCACCCCACTCATCACCATTAACACTTGATGATGGAAACGCAGAGGATTTCATTTATGCAGCAAAGGACAAGGTCCAAATATTCGACGTGGAGTCCGTCAGCGCCACCGGGTCCACGGCGGTGCCACCGTTTTCATGGAAGAAGCTGTGGCTGTTCACAGGGCCAGGGTTGCTTATGAGCGTGGCGTTTTTGGACCCAGGGAACTTGGAAGGTGACCTTCAAGCTGGTGCCATTGCAGGGTACTCTCTGCTTTGGCTATTGATGTGGTCAACCATAATGGGGCTTCTCATACAGCTTCTGTCAGCGAGGCTTGGTGTTGCCACGGGGCGCCACCTGGCAGAATTGTGCAGGGAGGAGTATTCCAATTGGGCAAGGCTAGTGCTTTGGTTCTTGGCTGAGTTGGCTTTGATTGCTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAAGATTCTTAGCCATGGGATTCTCCCCATTTGGGCTGGTGTGGTAATCACAGCCTTTGATTGTTTCTTCTTTCTGTTTCTTGAGAATTATGGAGTGAGGAAGTTGGAAGGTGTTTTTGCAATTTTCATTGGAACTATGGCCTTTTCTTTTGCGTGGATGTTCTTTGACACAAATCCAAGTGAAGAAGAACTTATGATGGGTCTTTTGATCCCAAGAGTTAGCTCAAAAACACTTCGCCAGGCTGTGGAAATTGTGGGTTGTGTTATAACCCCACACAATGTATTCCTCCATTCTGCATTGGTACAATCAAGAGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATCAATTACTACACAATTGAGTCATCAATTGCACTTTTAGTCACCTTGGTGATCAATCTATTTGTAATAACTGTTTTCGCTAGGGTGTTCTATGGTACAGAACAGGCCAATGGCATAGGATTGGTAAATGCAGGGCAATATCTTGAGGAGCGGTATGGAGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTATTAGCAGCTGGACAAAGTAGCACCATCACTGGTACATATGCAGGGCAGTTTATAACTGAGGGTTTTCTGAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTGTGGCCATTGTTTTTAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTCCAAGCAATACAGATTCCTTTTGCACTTATCCCTCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGTCCTTCAGAATAGGACCAATAGTAGAGTCTGCCTTGGCGCTTCAGCATGGATTGCATTCATTGCATATCTTGTTAAACATAGTGGTGCCATTCCTTCTATTCTGGTGA 1500 0.4413 MNTQSQQQQQQGQYKKREFKEEEENRLLQSDCETIPLSSPHSSPLTLDDGNAEDFIYAAKDKVQIFDVESVSATGSTAVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIAIKILSHGILPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAIFIGTMAFSFAWMFFDTNPSEEELMMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYTIESSIALLVTLVINLFVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGSFRIGPIVESALALQHGLHSLHILLNIVVPFLLFW 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00065 499 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 85 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 Hamap Divalent metal cation transporter MntH [mntH]. 73 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 166 192 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 270 293 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 196 215 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 439 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 377 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 221 242 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PRINTS Natural resistance-associated macrophage protein signature 405 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 NCBIfam Nramp family divalent metal transporter 92 461 - -
Sebi58g00065 499 Pfam Natural resistance-associated macrophage protein 108 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 19 478 IPR001046 GO:0016020|GO:0030001|GO:0046873
Sebi58g00065 499 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00065 Sebi-Chr58 1067193 1069220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00065 17 473 Inorganic Solute Cotransporters AT1G47240 72.767 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00065 K21398 - gmx:100803732 818.535