Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00060 ATGACTGCAAATGGTGGGGCAGGGACTGAGGAGCACAAGAGGAAAACTAATGATCCTTTTCTCAAGCCTGGGGGACACCAAAATATGCCAAGGTCACCTAGATTTAGGAAGGACTGGCCAGAGGATTTTCCAAATGACAATGTGATTGTAAATGGGGATAACAGTTTGAGTAGATATATTACTTCCTTAGCTGGATCTGGACCTCCTAGTACTAGCTTTTGTTCCACCACTGGTTCTGAACACTTTGTTGAAGATTTGCATGTTAAGAATTATAAGAACCCGGACATAGCTTTAGTTAGCCACCCATATAATTCCAGACAGTCTCAGAGGAATCAATTAGCTATTGAGTCTAAGCAAAGTAGCTTGAGTAGAGAAATTGCACCGAAGGTTGAAGAACAGATACCACTCAGATTAAGCAAAGGACTTAAGGGAATTGAATCTGAATTTTGGGGCCTGAAGTCTGTGTCTAGAAAGAATGTAAATCATGATCCACAGAAAGTCTATGCAAATATAAGCAATATAGACAAGACCATCACCCCAAGCAATGCACATCTTATCAGCAGTATTACAAAGAGTACTTCATCTACATATAATTTTCCTCAGTTGATTGTAGAGCAAACAGTAAAGGGAAAGATTTTCAAAGATTTGGACAAAAGCTTCAGTCTTGGAGGAGCACTAATGAGACAGGAGGATGAGAAACCTTCTTCTTCAACTAAGTTTCAATCTGATACACTGCTGAGATCAAATGTTAATGATAATATGCCTTCCTTGCAAGGAAATGTCATGTCTGGCACAGAATCTTTGAAGGATGGACTCAACTTAAGAGAGTGGCTGAAGTTTGAAGGTCATAAAATGAAGAAATCAGAAAGGATACATATATTTAAACAGATATTAGAATTGGTTGATGTTGCACACTCCCAAGGAGTTGTCTTGCAAGACTTAAGACCATCTTGTTTCACCTTATTGCCTTCAAGTAAAATTAAATACATTGGTTCATCCTGTCAACAAGAGTTAGATAATAAATCCATGACATGTAATGTGACAAGTAAAAGGCCTTTGGAACAGGATATCTGTGATTGCCAAAGTTTGAGTACAAAGCAGCAAAAGCTCTGTGAGGAGACAAGTTCTCTTAGGCAGCAGCATCACTTCACCTGTGTTCATGGCTGCAGGACTACAACAGTGAATCAAACTGATTCTGACATAAACTGGACCATGGGATCAAGGAGTAAAGAAAGTCTGCACCAAGATGGCTCCAGTTGTCAACATACTTCTACAGAAGAAAAACAGGTTATGTCTGCAACCATTCAGTTAGAAGAGAAGTGGTATTGTAGTCCAGAAGTGCTCAATGGTGGACTTTGCACATTTTCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGTTATTGTGCAATATTGAGTCATTGGAAGCACACTCAACTGTGATGTTGGATCTACGACATAGAATCTTACCACCAAAATTTCTATCAGAAAATCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTGCATCCTGAACCTTCTGCCCGCCCCAATACCAGGGTTATTTTAGAATCTGAATTTATATGTGAATCAGAGGAATCAAATTCTGGAGAAGATATTGTAGTATCTGAAGAAGATGAGGCTGAAACAGAGCAATTACTACATTTTTTAATTTCTCTTAAAGAAGTAAAGAAAAAACAGGAAGCCAAATTGGCAGAAGAGCTTAATTGCCTGGATGAAGATATTAAGGAGGTAGAAAGAAGTTATTCATATGGAACACCTTTGGCACAAATGAACTATCCTGAATTGGGAGGAAACAGTTTACATTTTCAAGGTCCTTCCAGTTCAGATAGTAGATCTATTCCAGGGTCATTTGTTGATGATGCAAGATTTATGAGTAATATAAGTGAGCTAGAGAAGTCTTACTTTTCCAAGAGATCCCAAGTCCTGCTCAAAGAGGCTTCAGCTGTTGAAAGCAATGATAAAAATGTGATAGAAAATAGATGGAGATTGACTCATGTAGAGAATGGTAATAAAGAGCCAGGAAGAATTCAGAGTTATGTTGGTTGTCTAGGACCCTTCTTTGAAGGTTTATGCAAGTTTGCTAGACACAGAAAGTTTGAGGAACGTGGAACATTAAGGAATAGAGATCTGCTTAGTTCAGCCAATGTAATATGTGCTTTAAGTTTTGACCGTGATGAGGATTACATTGCAGCAGGTGGAGTTTCAAAGAAAATAAAGATTTTTGACCTGAATGCTATTTCCAGTGATTCTATTGACATCCAGTATCCAGTTGTTGAGATGTCAAATAAATCAAAGCTTAGCTGTGTGTGCTGGAACAGTTATATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAAGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCTGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTCTGGAATATCAGTGAGAGAAATTCTCTAGGAACCATCTGGAACCCTGCCAATGTATGTTGTGTTCAGTTCTCTGCTTACTCAGCGCATCTTTTATTTTTTGGATCAGCTGATTACAAGGTGTATGGTTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTAGGTGGTCATAGCAAAGCTGTTAGCTATGTAAAACTTCTAGATGCTGAAACAGTGGTCTCTGCTTCCACTGACAACTCTTTGAAGCTCTGGAACCTCAAGAAAACCAGCTCTTCTGGGTTGTCATCTGATGCTTGTGACTTAACCTTTAAAGGTCATATTAATGAAAAGAATTTCGTGGGTTTATCCGTATTGGATGGATTCATTGCATGTGGCTCAGAATCTAATGAGGTATACTGTTATTACAAGTCTCTGCCAGTGCCAATGGCTTCTCACAAGTTTGAGTCAATCGATCCCATTTCTGGTCATTCAAATAGTGGTGATAATAATGGACAGTTTGTGTCTAGTGTCTGTTGGAGAAAGAAGACTAACATGCTTGTTGCTGCCAACTCAGTTGGAATTGTGAAACTACTGCAGATGGTCTGA 3114 0.3899 MTANGGAGTEEHKRKTNDPFLKPGGHQNMPRSPRFRKDWPEDFPNDNVIVNGDNSLSRYITSLAGSGPPSTSFCSTTGSEHFVEDLHVKNYKNPDIALVSHPYNSRQSQRNQLAIESKQSSLSREIAPKVEEQIPLRLSKGLKGIESEFWGLKSVSRKNVNHDPQKVYANISNIDKTITPSNAHLISSITKSTSSTYNFPQLIVEQTVKGKIFKDLDKSFSLGGALMRQEDEKPSSSTKFQSDTLLRSNVNDNMPSLQGNVMSGTESLKDGLNLREWLKFEGHKMKKSERIHIFKQILELVDVAHSQGVVLQDLRPSCFTLLPSSKIKYIGSSCQQELDNKSMTCNVTSKRPLEQDICDCQSLSTKQQKLCEETSSLRQQHHFTCVHGCRTTTVNQTDSDINWTMGSRSKESLHQDGSSCQHTSTEEKQVMSATIQLEEKWYCSPEVLNGGLCTFSSNIYSLGVLLFELLCNIESLEAHSTVMLDLRHRILPPKFLSENPKEAGFCLWLLHPEPSARPNTRVILESEFICESEESNSGEDIVVSEEDEAETEQLLHFLISLKEVKKKQEAKLAEELNCLDEDIKEVERSYSYGTPLAQMNYPELGGNSLHFQGPSSSDSRSIPGSFVDDARFMSNISELEKSYFSKRSQVLLKEASAVESNDKNVIENRWRLTHVENGNKEPGRIQSYVGCLGPFFEGLCKFARHRKFEERGTLRNRDLLSSANVICALSFDRDEDYIAAGGVSKKIKIFDLNAISSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDASTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISERNSLGTIWNPANVCCVQFSAYSAHLLFFGSADYKVYGYDLRHTRIPWCTLGGHSKAVSYVKLLDAETVVSASTDNSLKLWNLKKTSSSGLSSDACDLTFKGHINEKNFVGLSVLDGFIACGSESNEVYCYYKSLPVPMASHKFESIDPISGHSNSGDNNGQFVSSVCWRKKTNMLVAANSVGIVKLLQMV 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00060 1037 ProSiteProfiles Trp-Asp (WD) repeats profile. 811 853 IPR001680 GO:0005515
Sebi58g00060 1037 ProSiteProfiles Trp-Asp (WD) repeats profile. 897 937 IPR001680 GO:0005515
Sebi58g00060 1037 SUPERFAMILY WD40 repeat-like 723 1034 IPR036322 GO:0005515
Sebi58g00060 1037 SUPERFAMILY Protein kinase-like (PK-like) 266 532 IPR011009 -
Sebi58g00060 1037 ProSiteProfiles Trp-Asp (WD) repeats profile. 768 810 IPR001680 GO:0005515
Sebi58g00060 1037 Coils Coil 569 589 - -
Sebi58g00060 1037 PRINTS G protein beta WD-40 repeat signature 831 845 IPR020472 -
Sebi58g00060 1037 PRINTS G protein beta WD-40 repeat signature 915 929 IPR020472 -
Sebi58g00060 1037 PRINTS G protein beta WD-40 repeat signature 788 802 IPR020472 -
Sebi58g00060 1037 ProSitePatterns Trp-Asp (WD) repeats signature. 915 929 IPR019775 -
Sebi58g00060 1037 Gene3D - 696 1037 IPR015943 GO:0005515
Sebi58g00060 1037 Gene3D Transferase(Phosphotransferase) domain 1 270 539 - -
Sebi58g00060 1037 SMART WD40_4 890 928 IPR001680 GO:0005515
Sebi58g00060 1037 SMART WD40_4 847 886 IPR001680 GO:0005515
Sebi58g00060 1037 SMART WD40_4 762 801 IPR001680 GO:0005515
Sebi58g00060 1037 SMART WD40_4 716 751 IPR001680 GO:0005515
Sebi58g00060 1037 SMART WD40_4 804 844 IPR001680 GO:0005515
Sebi58g00060 1037 SMART WD40_4 989 1035 IPR001680 GO:0005515
Sebi58g00060 1037 SMART WD40_4 939 978 IPR001680 GO:0005515
Sebi58g00060 1037 SMART serkin_6 197 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi58g00060 1037 ProSitePatterns Trp-Asp (WD) repeats signature. 788 802 IPR019775 -
Sebi58g00060 1037 ProSiteProfiles Protein kinase domain profile. 132 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi58g00060 1037 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 897 930 - -
Sebi58g00060 1037 PANTHER PROTEIN SPA1-RELATED 2 51 1037 IPR044630 GO:0009640
Sebi58g00060 1037 Pfam WD domain, G-beta repeat 726 751 IPR001680 GO:0005515
Sebi58g00060 1037 Pfam WD domain, G-beta repeat 806 844 IPR001680 GO:0005515
Sebi58g00060 1037 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00060 Sebi-Chr58 977300 983436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00060 808 992 Miscellaneous Gene Families AT5G08390 24.194 6.65e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Sebi58g00060 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00060 K16240 - gmx:100799267 1538.47