Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00054 ATGAAGTTAGCGGCGGCGACGGTGGCGACTACGCCGCCGAGAATAGCCACCGGGCCTGGAGGTCATATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTACACTTAACAGTGGAAAATACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATATGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTTTTAA 558 0.3978 MKLAAATVATTPPRIATGPGGHIQCTVKSIHVYLFENSINEGNVYMLENLSVTLNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPYESYVVVLQFAKMKNFKGF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00054 185 CDD RPA1_DBD_B_like 109 185 - -
Sebi58g00054 185 Pfam Domain of unknown function DUF223 18 103 IPR003871 -
Sebi58g00054 185 Gene3D - 83 185 IPR012340 -
Sebi58g00054 185 SUPERFAMILY Nucleic acid-binding proteins 21 82 IPR012340 -
Sebi58g00054 185 SUPERFAMILY Nucleic acid-binding proteins 89 184 IPR012340 -
Sebi58g00054 185 Gene3D - 16 82 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00054 Sebi-Chr58 824273 827274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00054 20 184 Core DNA Replication Machinery Family AT2G06510 27.011 3.30e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00054 - - ahf:112726712 192.586