Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00031 ATGACTGCAAAGGGACAGAAATTGTTTGAAGATTGGAAGTCAGAGCCATCATCTTTAAGTATAGAGAAGAATGATTCTACAAGTGACAAAACAAAAATTCAATCAAGTGGAAGTGGTGGATCAATAAAAAAATTGGTTTCTAGGTGCAATGTTCTTGATCCACAGGGGCCACTACTTCAGAAATGGAACAAGATTTTTGTAATAACATGTGTGATGGCAATCTCTGTGGACCCGCTGTTCTTTTACATCCCTGTGATTGATGACAATGGAAAATGCCTTGACTTGGATGGAAAATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACTGGGTTCATTGCCCTTCTTCACGTGTATTTGGAAGGGATGGTCATTTTAGCTATCATTCCAATCCCAAAATGCTCAGTTCCATATGCAGCAAAGGATTTGTTGAAGTATACAATAATAGCTCAGTATGTGCCAAGAATTCTGCGGATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATTTGTTTTCAGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATACTGCATTCTCTCATGATTTCTACCTGAGCTGTGGACGAGGCACTCCTACTATTCTATCAATTCTCAATAGTAGTAGTTGTTGCCCTTACATTGATCCTGATGACATTGAAGACCAAACAGTTTTCAATTTTGGAATATTTATAGAAGCTCTAAAGTCTCGTGTGGTAGAGCCATCTACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTTGGGAGATAATCTTTGCTATCTTCATTGCCACCTTTGGATTGGTTCTGTTTGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTGCCACCGGATGCTACCTGATTTCTTGAAGCAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGGAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAGCATGGATACACAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAACTTGCTACTGCCACTACAAATGGTGGGAGAACAGGTTTCTTCAACTCCTCTGTGCTCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTTTGACATGGGCCTTGGATCCAAACTCCTCCTCAAATCTACCCATTTCAACTAGAACAGTGCAAACTATCTCAGAAGTTGAAGCTTTTGCTCTCATGCCTGAAGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAACTCCAGGATACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGGTACATGTTTCATACAAGCAGCTTGGCGTAGATACAAGAGAAAGAAGACTGATAGGTTATTACGTGAAGCAGAAGAGAAGCTACATGCTTTAGAAAACGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACTGTATATGCATCAAGATTTGCATCAAGATTTGCATCCAATGCATTGAAACCCTTGAGAAGTGGCAAATGCAACAGAATGCCACAGACACAGAGATTACTAATGCCTCAGAAGCCAGCTGAGCCAGATTTCACTGCTAAAATAAACTAG 1980 0.4061 MTAKGQKLFEDWKSEPSSLSIEKNDSTSDKTKIQSSGSGGSIKKLVSRCNVLDPQGPLLQKWNKIFVITCVMAISVDPLFFYIPVIDDNGKCLDLDGKLKITASVLRTFFDLFYILHIIFQFRTGFIALLHVYLEGMVILAIIPIPKCSVPYAAKDLLKYTIIAQYVPRILRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWRRQLKNTAFSHDFYLSCGRGTPTILSILNSSSCCPYIDPDDIEDQTVFNFGIFIEALKSRVVEPSTDFPQKFFYCFWWGLRNVSSVGQNLKTSTYVWEIIFAIFIATFGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMCHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFESMDTQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISEVEAFALMPEDLKFVASQFRRLINSKQLQDTFRFYSLQWRTWGTCFIQAAWRRYKRKKTDRLLREAEEKLHALENEEGSSPSFVATVYASRFASRFASNALKPLRSGKCNRMPQTQRLLMPQKPAEPDFTAKIN 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00031 659 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 33 654 - -
Sebi58g00031 659 Pfam Ion transport protein 62 356 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi58g00031 659 SUPERFAMILY cAMP-binding domain-like 357 544 IPR018490 -
Sebi58g00031 659 Gene3D - 64 352 - -
Sebi58g00031 659 SUPERFAMILY Voltage-gated potassium channels 53 350 - -
Sebi58g00031 659 Coils Coil 581 601 - -
Sebi58g00031 659 SMART cnmp_10 428 559 IPR000595 -
Sebi58g00031 659 Gene3D Jelly Rolls 426 546 IPR014710 -
Sebi58g00031 659 FunFam Cyclic nucleotide-gated ion channel 1 426 544 - -
Sebi58g00031 659 CDD CAP_ED 428 560 IPR000595 -
Sebi58g00031 659 Gene3D Helix hairpin bin 355 419 - -
Sebi58g00031 659 MobiDBLite consensus disorder prediction 19 40 - -
Sebi58g00031 659 ProSiteProfiles cAMP/cGMP binding motif profile. 428 512 IPR000595 -
Sebi58g00031 659 FunFam Cyclic nucleotide-gated ion channel 1 355 419 - -
Sebi58g00031 659 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00031 Sebi-Chr58 494914 498759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00031 9 656 Ion Channels AT5G53130 59.777 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00031 K05391 - gmx:100795201 1024.23