Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00029 ATGACATTATGCATTGCTATACCAGCTTCCATCTTTATTATTTTAATTGGATGCTGTGTGTGCTACCGAGACAGAATAGGCAATACTCCTCCCAGTCCCAGCAATAACGTTGCTGCAATATCACTGGAACCTGCCATTGCCACCACTGGTCTGGATGAGTCTACCATTGAATCATATGAGAAGGTAGTGCTTGGGGAGAGTCGACGAGTTCCTGGACCCAATGATGGATGTTGTTGGATATGCTTGTCAGAGTACAACAGCAAAGAGACAATCAAATTGATTCCTGAATGCAAACACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACAACACTTGCCCAGTTTGCCGCAACTCTCCCTACCCTCCTGCTATTACTTCCAGTACCAGTAACCCTTGA 408 0.4534 MTLCIAIPASIFIILIGCCVCYRDRIGNTPPSPSNNVAAISLEPAIATTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIKLIPECKHCFHADCIDEWLRMNNTCPVCRNSPYPPAITSSTSNP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00029 135 SUPERFAMILY RING/U-box 71 126 - -
Sebi58g00029 135 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 123 IPR046948 -
Sebi58g00029 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 124 IPR013083 -
Sebi58g00029 135 CDD RING-H2_EL5-like 77 120 - -
Sebi58g00029 135 SMART ring_2 78 119 IPR001841 -
Sebi58g00029 135 SMART ringv_2 77 120 IPR011016 GO:0008270
Sebi58g00029 135 Pfam Ring finger domain 78 120 IPR001841 -
Sebi58g00029 135 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00029 Sebi-Chr58 487678 488085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00029 5 134 C3H Transcription Factor Family AT5G07040 44.030 3.79e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00029 - - gmx:100798415 201.445