Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00028 ATGGCGGATTCGTTGCCTGTGTCTTGCTATGTTATTAAAAGGCTTTCAGTTCCAATTGCAATGCCAGGACGATATGAGGAAAATCTCACAGATGTCCTTAGTGAAGATCTTCGATTAACATGGGATAAACCTGACTGCCGATATTGCGAATCACAAGAGCTAATGTGTGGATTTGAGAGCAGTAACAGCAATCGAGTTACCTGTTTATCTGATTTCCAAACAGATGATTCGCAACAAGGACTACGAGTTTTTAGAATTATTGCATTATGCATTAGTGGACCAGCTGCAGTGTTTGTTATTTTGATGGCAAGCTGTGTGTGCTACAATGACAGAATAACCAATGCTACAAGAAATGCAGCTTCCCTGAGGTCAGCACCAGCTGCAATATTACCAGAACCAACCATTGTAACTGTGGGTCTGGATGAGTCTACAATTGAATCTTATGAGAAGGTAGTACTTGGGGAGAGTCGAAGGGTGCCTGGACCCAATGGTGGATGTTGCTGGATATGTTTGTCAGAGTATAACAGCAAAGAGACAATCAGATGCATTCCTGAATGCAACCACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACAACACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTTCTTCTGTTGTCTCCTCCATAAATCCTTAA 678 0.4336 MADSLPVSCYVIKRLSVPIAMPGRYEENLTDVLSEDLRLTWDKPDCRYCESQELMCGFESSNSNRVTCLSDFQTDDSQQGLRVFRIIALCISGPAAVFVILMASCVCYNDRITNATRNAASLRSAPAAILPEPTIVTVGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECNHCFHADCIDEWLRMNNTCPVCRNSPSPSPSSVVSSINP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00028 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 214 IPR013083 -
Sebi58g00028 225 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 213 IPR046948 -
Sebi58g00028 225 Pfam Ring finger domain 167 209 IPR001841 -
Sebi58g00028 225 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Sebi58g00028 225 SMART ring_2 167 208 IPR001841 -
Sebi58g00028 225 SUPERFAMILY RING/U-box 166 213 - -
Sebi58g00028 225 CDD RING-H2_EL5-like 166 209 - -
Sebi58g00028 225 Pfam Wall-associated receptor kinase C-terminal 18 69 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00028 Sebi-Chr58 475809 477887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00028 4 214 C3H Transcription Factor Family AT2G25410 42.991 4.43e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00028 - - aprc:113851081 321.242