Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00016 ATGTGCTTCAGTTTATTTCAACAAGTAATGGTGTATCATGTCATGTCATGTCTGATTGTATCTTTATTTTTTGTGAGGAATATTTTAGCTATAGAGTTTCTTGTCCTTGTAGGAATACAGTGCCACAATGGTCATACCCTTTGTTCCACTTGTAAGACAAGGGTACACAACCGGTGCCCAACTTGTAGACAGGAACTTGGTGACATCAGGTGTCTAGCATTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATATAGCACTCTTGGGTGTCCAGAGATATTTCCCTATTACAGTAAACTGAAACATGAGTCTATTTGTAACTTCAGACCTTACAACTGCCCCTATGCAGGGTCAGACTGTTCTGTTGTTGGGGATATTCCACACCTTGTTGCTCATTTAAGGGATGACCACAGAGTTGATATGCATTCTGGATGCACTTTCAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCCTTTCAGCTTGGTATGGCTCCTGTGTACATGGCATTCCTCCGTTTCATGGGAGACGAAAGAGAAGCAAGGACCTACAGCTACAGTCTTGAGGTAGGAGGAAATGGGCGTAAACTAACTTTTGAGGGCAGTCCAAGAAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGCCATGATGGCCTCATTGTATATCGAAACATGGCACTTTTCTTCTCAGGTGGGGATAGGAAAGAGTTGAAGTTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAGAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAG 870 0.4264 MCFSLFQQVMVYHVMSCLIVSLFFVRNILAIEFLVLVGIQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSTLGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDIPHLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARTYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00016 289 Pfam Seven in absentia protein family 69 268 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sebi58g00016 289 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 139 268 IPR008974 GO:0005515
Sebi58g00016 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 135 IPR013083 -
Sebi58g00016 289 FunFam E3 ubiquitin-protein ligase SINAT5-like 136 268 - -
Sebi58g00016 289 FunFam E3 ubiquitin-protein ligase SINAT3 77 135 - -
Sebi58g00016 289 CDD Sina 141 269 - -
Sebi58g00016 289 SUPERFAMILY TRAF domain-like 80 272 - -
Sebi58g00016 289 ProSiteProfiles Zinc finger SIAH-type profile. 80 140 IPR013010 GO:0008270
Sebi58g00016 289 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00016 Sebi-Chr58 350585 352037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00016 40 275 C3H Transcription Factor Family AT2G41980 79.237 7.25e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00016 K04506 - gmx:100792687 530.02