Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00012 ATGAAGATTGAGATGGGGTTAGGAGGAGGTGGGGGGTTGTGGAATGAAGATGAAAAGGCCATGGTGGTGGAGGTTCTTGGCGCTACAGCTTTTGATTACTTGATTGCTAACTCTGTCTCGAATGAGAATCTGTTAATGGCAATTGGGAGTGGTGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGCCCCAACGTGTCCAACTTCAGCTGGAACTATGCAATCTTCTGGCAAATTTCACAGTCCAAATATGGGGATTGGGTTCTGGGTTGGGGAGATGGGTGTTGCTGGGAGCCAAAGGAAGAAGAAGAAGGTGGAGTCAGAGGGGTTCTCAGCCTTAGCCTTGATGATGAGAAGCAACAGAGGATGAGGAAGAAGGTGCTGCAGAAGCTACACACAACATTTGGGGGTTCAGATGAGGACAATTATGCTTTTGGACTGGACCGAGTCACAGACACAGAAATGTTCTTTCTTGCTTCCATGTACTTCTCCTTTCCCCCTGGCCATGGTGGACCAGGTAAGTGCTTTGCTTCAGAGGGAACTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAATCCTGTGACCCCTTTTAGGGAGAAACTTGCTATCAGGAAAATGGAGGAGAGGCCATGGGGAGGAGGCCATCCTAATGGGAAGAGCATTAGCATTCCAAATGGTATTCATGGTTCTAGTTGGGGAGCTACTCAAGTTGTGAGGCAGCCTGAACTTTTTGCTCCTAGGCCCACCACAAGCAATGTGCCTGAGCTAGCAAATGGAGCAAGGCATGATTTCCTGCTTAACAACTATCAACAACAGCGGCAGATGCAGCATATGCAAATTGATTTCTCAGGAGCCACATCAAGGCCTTCTGTGAGAACAATCATTACTGAACCTGAGCTTTCTGAAGTTGAAGGCACATGTAAGGAGGAGAGACCAAGTGCCACTGATGATAGGAGGCCAAGGAAGCGGGGCAGAAAGCCAGCTAATGGAAGGGAGGAACCCCTCAATCATGTAGAGGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGTTTCTATGCCTTAAGATCTGTTGTGCCAAATATCTCCAAGATGGACAAGGCATCTCTGTTGGGAGATGCTATTTCTTACATCAATGAGCTTCAGGTAAAACTCAGGATGTTGGAGTCTGAGAGAGAGAGATTTGGAAGCACTTCTAGAGATGGATCAGCATTGCAGGCCAACTCAGGAGCAGAAAACCATCAGCATAGAGCTCCTCCTGATGTGGATATTGAAGCTTCACAAGATGGGGTCATTGTAAAGGTGAGCTGTCCCATTGATGTTCACCCTATTGCAAAAGCCATCCAAGCTTTCAAAGAGGCAGAGGTCAATGTTTTAGAGTCAAAACTCACTGCTGCAAATGATACTGTCATGCACACATTTATAATCAAATCCCAAGGACCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCCCAGAATCCAACTCCTTAAAGCCATTACCATCTGTTGGGTAG 1527 0.4715 MKIEMGLGGGGGLWNEDEKAMVVEVLGATAFDYLIANSVSNENLLMAIGSGENLQNKLSDLVERPNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCWEPKEEEEGGVRGVLSLSLDDEKQQRMRKKVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPPGHGGPGKCFASEGTGVPKIFGQDLNPVTPFREKLAIRKMEERPWGGGHPNGKSISIPNGIHGSSWGATQVVRQPELFAPRPTTSNVPELANGARHDFLLNNYQQQRQMQHMQIDFSGATSRPSVRTIITEPELSEVEGTCKEERPSATDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYINELQVKLRMLESERERFGSTSRDGSALQANSGAENHQHRAPPDVDIEASQDGVIVKVSCPIDVHPIAKAIQAFKEAEVNVLESKLTAANDTVMHTFIIKSQGPEQLTKEKLIAAFSPESNSLKPLPSVG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00012 508 SMART finulus 339 388 IPR011598 GO:0046983
Sebi58g00012 508 Coils Coil 379 399 - -
Sebi58g00012 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Sebi58g00012 508 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Sebi58g00012 508 Gene3D - 326 398 IPR036638 GO:0046983
Sebi58g00012 508 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 180 IPR025610 -
Sebi58g00012 508 CDD bHLH_AtAIB_like 330 395 - -
Sebi58g00012 508 MobiDBLite consensus disorder prediction 400 414 - -
Sebi58g00012 508 FunFam Transcription factor bHLH13 326 400 - -
Sebi58g00012 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 396 IPR036638 GO:0046983
Sebi58g00012 508 MobiDBLite consensus disorder prediction 304 344 - -
Sebi58g00012 508 MobiDBLite consensus disorder prediction 395 422 - -
Sebi58g00012 508 PANTHER MYC 42 493 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00012 Sebi-Chr58 291732 293567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00012 10 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 36.015 2.68e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi58g00012 bHLH-MYC_N 2.8e-28 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00012 - - gmx:100807078 448.743