Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi58g00008 ATGAATGGAATGCCCCTTCTTCCTTGTGAAGATGGAGGAAACTGGGGTTTGAAAGATGACGATCTGTATAGAGAGCTATGGAGGTTATGTGCAGGACCTTTGGTAGATGTTCCTCGTAGGGGAGACAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATCCCCCATTTCAATCTTCCCTCTAAGATTTTTTGCCGTGTGGTGAACATTCAGTTGTTGGCGGAACAAGAAACTGATGAGGTTTATGCTTGTATCGCTTTGCTTCCAGAATCAGATGACATGACCCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATATAGAGCTAGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGGGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTCATTGTTGGTTTGAACAAATATCTGGAAGCAGTCAACAATAAATTCTCAGTTGGCATGCGTTTCAAAATGAGATTTGAGGGAGAGGACTCACCAGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTGTCTCCAGGATGGTCAAATTCTCAGTGGCGGTTCAATGGGATGAACCAGCAACTATTCCAAGGCCCAGAGAGAGTTTCTTCTTGGGAGATTGAGCCTTTTATAGCTTCTCCTTCTCTGAATGTCACTCAACCAGTGCTGAAGGGCAAAAGATCTAGGCCAGCTGATGTTTCATCTTCTGCTGCTTCAGGTTTCTGGTATAATGGATCATCCCAGGCTCATGAGCTTACCCAATTAGGTGGTGCTGCTGAAGTCCAAAGCAAGGAAAATCATGTTGTATGCTCTCTGAGGCAGAAGGACATTAATAGCAACCCCATTAATACCAACCCCATCAGCTCTAGAGTCCGGGTGGAAGGAATATGGCCTTCTTCCCCACATTTGAATGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAATTGACTTGACCATGTTGAGTGGCTATGATGATCTCATAGATGAACTTGAGAAATTGTTTGATATTAAAGGAGAGCTGCGTTTTTTACAAGACAAATGGGCAGTTACTTTCACTGATGATGAAAATGACATGATGCTTGTGGGTGATGATCCATGGCTGGAGTTTTGCAACATAGTGAAGAGGATTTTGATTTGTTCAAGGGAGGATTTGAAGAAGATAAATGCAAGGTACCTGCTGCTTCATCAGAGGTTGAAGAGACACTATTGA 1353 0.4412 MNGMPLLPCEDGGNWGLKDDDLYRELWRLCAGPLVDVPRRGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKIFCRVVNIQLLAEQETDEVYACIALLPESDDMTQATPTQELAAKDLHGFEWKFKHIYRARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSPGWSNSQWRFNGMNQQLFQGPERVSSWEIEPFIASPSLNVTQPVLKGKRSRPADVSSSAASGFWYNGSSQAHELTQLGGAAEVQSKENHVVCSLRQKDINSNPINTNPISSRVRVEGIWPSSPHLNVQMQGVAVGRAIDLTMLSGYDDLIDELEKLFDIKGELRFLQDKWAVTFTDDENDMMLVGDDPWLEFCNIVKRILICSREDLKKINARYLLLHQRLKRHY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi58g00008 450 Pfam Auxin response factor 158 235 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi58g00008 450 SUPERFAMILY DNA-binding pseudobarrel domain 100 135 IPR015300 -
Sebi58g00008 450 Gene3D - 76 162 IPR015300 -
Sebi58g00008 450 SUPERFAMILY CAD & PB1 domains 345 424 - -
Sebi58g00008 450 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 106 133 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi58g00008 450 Gene3D - 346 436 - -
Sebi58g00008 450 ProSiteProfiles PB1 domain profile. 347 429 IPR000270 GO:0005515
Sebi58g00008 450 Pfam AUX/IAA family 345 433 IPR033389 -
Sebi58g00008 450 FunFam Auxin response factor 193 261 - -
Sebi58g00008 450 Gene3D - 193 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi58g00008 Sebi-Chr58 151471 155142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi58g00008 12 441 B3 DNA Binding Superfamily AT2G46530 42.906 8.78e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi58g00008 K14486 - gmx:100795763 520.39