Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi589g00043 ATGGATCGCAAGAGGGGAAGGCTAGAAGGCTCCTTCAATGGCAATGGCGGCGCCAAGAAATTCAGGCCAGAAATGGAGAACTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGGTGTCCATTTGGTGAGGGATGCCATTTCCTGCACTATGTTCCTGGTGGCTTCAAATCTGTCTCTCAGATGATCAATGTTGGGAGCAATCCTGCTATTCCGCAAATGGGTAGAAATCCAACTGCTCCACCATCCTTCCCAGATGGGTCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTATAATACAGTTGAAGGTTGCAAATTTGGTGATAAATGTCACTTTGCCCATGGTGAATGGGAGCTTGGCAGGCCTACTGTTCCATCATATGAAGATACTCGTGGCTTGGGACAAATGCAAAGCAGCAGGGTTGGCGGACGAGTTGAGCCCCCACTTCCAGCTCATGGAGCTGCCGCCAGCTTTGGAGCCTCAGCTACTGCCAAGATTAGTATCAATGCTTCCCTAGCAGGAGCTATCATTGGAAAAAACGGTATCAACTCTAAACAAATCTGTCGTGTAACAGGAGCTAAGCTTTCCATAAGGGAACATGACTCAGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCATGAGCTTATTCTAAATGTTAGTTCTGCCTCTGGGCCTCCAACGAAAAACATTACAGCACAGACTTCTGGCCCTGCAAGCAACTTCAAGACTAAGCTATGTGAAAACTTTGCCAAAGGTTCCTGCACTTTTGGAGAGAGGTGCCACTTCGCACATGGAACAGATGAACTACGCAAGACTGCGATATGA 897 0.4682 MDRKRGRLEGSFNGNGGAKKFRPEMENFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKSVSQMINVGSNPAIPQMGRNPTAPPSFPDGSSPPVVKTRLCNKYNTVEGCKFGDKCHFAHGEWELGRPTVPSYEDTRGLGQMQSSRVGGRVEPPLPAHGAAASFGASATAKISINASLAGAIIGKNGINSKQICRVTGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSASGPPTKNITAQTSGPASNFKTKLCENFAKGSCTFGERCHFAHGTDELRKTAI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi589g00043 298 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Sebi589g00043 298 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Sebi589g00043 298 Pfam KH domain 175 237 IPR004088 GO:0003723
Sebi589g00043 298 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Sebi589g00043 298 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Sebi589g00043 298 Gene3D - 262 296 - -
Sebi589g00043 298 Gene3D - 95 132 - -
Sebi589g00043 298 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Sebi589g00043 298 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Sebi589g00043 298 CDD KH-I_AtC3H36_like 176 240 - -
Sebi589g00043 298 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Sebi589g00043 298 MobiDBLite consensus disorder prediction 1 33 - -
Sebi589g00043 298 FunFam Zinc finger CCCH domain-containing protein 259 295 - -
Sebi589g00043 298 Gene3D K Homology domain, type 1 168 261 IPR036612 GO:0003723
Sebi589g00043 298 PANTHER CCCH ZINC FINGER/TIS11-RELATED 21 137 IPR045877 GO:0003729
Sebi589g00043 298 SMART kh_6 171 241 IPR004087 GO:0003676
Sebi589g00043 298 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Sebi589g00043 298 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Sebi589g00043 298 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Sebi589g00043 298 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Sebi589g00043 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 289 IPR000571 GO:0046872
Sebi589g00043 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Sebi589g00043 298 SUPERFAMILY CCCH zinc finger 263 295 IPR036855 GO:0046872
Sebi589g00043 298 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 163 243 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi589g00043 Sebi-Chr589 594295 600638 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi589g00043 KH_1 6.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi589g00043 - - gmx:100792652 541.962