Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi589g00028 ATGGAAGAATCAACAGCAACAATAGAGAAGATAGAGGAATCGGTGGCGAGCGTCCTCGATGAAGCAAAAGACCTTCAGGATTCTGTTGCCGCTCACCTCTCTAAGACCTCAAGCGATGAACAACCTCTTCGCCAGCGTGCCCTTCGTCTCGACTCCAAAATCCTTTCCCTCCGCTCTTCCCTTGATTCTCTTCTCTCCAATAAGCTCATCAACCCTACCTTAGCTGATAAGTTGGATGAAGATTTGCAAAGAGCAAGATGCATCATCGTTGATGGCGACGCTTCTTCATTCCTTCCTGGCCGTGCTCAAGGAAGCTTTCTGAGGATGTTTCTGGGTCCTATTAATGTGCGTGCCTCTCGGAAGGATGTCCAGCTTAAGGTCAAAGAGGAATACAACAGTTATAGGGATAGAACTGCCCTGCTATTCCTGCTTTTTCCATCTATGCTTCTTATTCTAAGATCTTGGGTTTGGGCTGGATGCATGCCAGCTTTTGCTGTTCAGATTTACCAGGCCTGGCTGCTGTTTCTCTACACTGGTTTGGCATTACGAGAGAACATACTGAGAGTCAATGGAAGTGATATCCGTCCATGGTGGATATATCATCATTATTGTGCTATGGTAATGGCCCTCGTGAGTCTCACTTGGGAAATTAAAGGACAACCAGACTGTGCAAAGAAGCAGAGAGGTGTGCAACTTTTCCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTACAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGGCTAAGAGGATGGATGTTGTGTGGGGAGAAACGGCTGGTGTGGATGGCCAACTGTGGTTGTTGTGTCCTATACTTTTCATATTGCAGGGATTTGAGGCATATGTCGGACTGTTGTTGCTTAAGACAGCATTTGTTGGGGTTGTTTCTGAGTGGCAGGCACATGCTTCTCCTCCTGGTTACTTTGTTCGCCTGGAAAATACAACTTGCAAAGACGATATATATTTGAGGAAGAGAACCAGAATGCGTCGGTGGCTGTGTTGCACCTGTCAGGTGGAAGAATCTTACCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACTCAAAAGGCTCAAAGGTGTCAGCTCCTGTCAAGCCTGAAACACAAAAGGCACCACCACCTATTGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAAAAGACTGACAACTTTGGATCAAAGGCATTGATTGGCGAAGGATCATATGGAAGGGTGTATTATGCAACCTTAAACGATGGAAAAGCTGTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCTGAATCAAATAATGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGATAATTTTGTTGAGTTGCAAGGTTACTGTGTTGAAGGAAATCTTCGTGTTCTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCATGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGTCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGACGCAGCAAGGGGATTAGAATATTTGCATGAGAAAGTTCAACCACCAATTATACACAGAGATATCAGATCAAGTAATGTGCTTATCTTTGAAGATTACAAGGCAAAGATAGCTGATTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTGTTGGGAACTTTTGGGTATCATGCTCCAGAATATGCCATGACTGGCCAGTTGACTCAAAAAAGTGATGTCTACAGTTTCGGGGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGATCATACCATGCCAAGAGGACAGCAAAGTCTTGTTACATGGGCTACCCCAAGATTAAGCGAAGATAAAGTGAAACAATGCGTGGACCCAAAACTGAAAGGAGAATATCCCCCAAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGTGTGCAATATGAAGCAGAGTTTAGGCCAAATATGAGCATTGTTGTCAAAGCACTGCAACCACTTCTGAAGTCTCCTGCTCCTGCACCAGAAAGCTGA 2118 0.4419 MEESTATIEKIEESVASVLDEAKDLQDSVAAHLSKTSSDEQPLRQRALRLDSKILSLRSSLDSLLSNKLINPTLADKLDEDLQRARCIIVDGDASSFLPGRAQGSFLRMFLGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSMLLILRSWVWAGCMPAFAVQIYQAWLLFLYTGLALRENILRVNGSDIRPWWIYHHYCAMVMALVSLTWEIKGQPDCAKKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAFVGVVSEWQAHASPPGYFVRLENTTCKDDIYLRKRTRMRRWLCCTCQVEESYPSNENEHLKSPRNYGDGNSKGSKVSAPVKPETQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNDGKAVAVKKLDVSSEPESNNEFLTQVSMVSRLKNDNFVELQGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKSPAPAPES 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi589g00028 705 Pfam Protein tyrosine and serine/threonine kinase 419 692 IPR001245 GO:0004672|GO:0006468
Sebi589g00028 705 ProSitePatterns Tyrosine protein kinases specific active-site signature. 542 554 IPR008266 GO:0004672|GO:0006468
Sebi589g00028 705 SMART tyrkin_6 414 692 IPR020635 GO:0004713|GO:0006468
Sebi589g00028 705 Coils Coil 1 28 - -
Sebi589g00028 705 FunFam PTI1-like tyrosine-protein kinase 3 492 702 - -
Sebi589g00028 705 MobiDBLite consensus disorder prediction 360 397 - -
Sebi589g00028 705 Gene3D Phosphorylase Kinase; domain 1 386 490 - -
Sebi589g00028 705 SUPERFAMILY Protein kinase-like (PK-like) 394 692 IPR011009 -
Sebi589g00028 705 Pfam TMPIT-like protein 10 318 IPR012926 GO:0016020
Sebi589g00028 705 ProSiteProfiles Protein kinase domain profile. 414 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi589g00028 705 Gene3D Transferase(Phosphotransferase) domain 1 492 701 - -
Sebi589g00028 705 FunFam PTI1-like tyrosine-protein kinase 3 376 490 - -
Sebi589g00028 705 ProSitePatterns Protein kinases ATP-binding region signature. 420 443 IPR017441 GO:0005524
Sebi589g00028 705 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 347 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi589g00028 Sebi-Chr589 353145 366146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi589g00028 348 693 Receptor kinase-like Gene Family AT4G02010 46.705 1.31e-90 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Sebi589g00028 TMPIT 4.7e-92 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi589g00028 K13436 - mnt:21407434 714.531