Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi589g00012 ATGCCGGAGCTTCGTAGTGGAGTGCGACGTGGTCGTGCTGCGGCGGTAGGCCAGAAAGACTCGGAACCGGCGAAGAGGAACGTGAAGACTCGTGCTGCAGTCCCGGCAGCAGAGAAAGGGAGGCCAAGGACTAGATTGGCGGCGAAGAAATTGGAGCGTGAGAAGCCTCCGATCCCGACACCGGAACCTGTTAGTGATAAAGAACGCGCAAAGAACAAGAAAGAAGGTGCAGGCGTGATGGGTGATGAAAGTGGTGGGTTGAGTGCTAATAAGGGTGCTTCACCAGAGGAAGATGCGAACACCCCACCTTTTCCAGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAGGTAGAGAGGAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGTCGTCGCGAGCGTGCTTCAGGCCCTGGAGCCATGGAGGTTGCTCTTAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTCGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGTTTGTGGGATGTCTGGAATTCCTCAAGTCAGACGATGTCTGCTGAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCGATACTTGAAAAGATGCATTCAAGAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTGGGTCAGCCAGCTACACCGCAAGAGAAGAAACTATTTCTTGTTGACCTTGGGTTAGCAACAAAGTGGAAAGACTCCTCCACTGGACTGCATGTTGAATATGATCAACGCCCTGATATAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCGTACACACTGATCTTCCTTCATAAAGGCCGATTACCATGGCAGGGTTATCAGGGTGATTCCAAATCCTTCCTTGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATTCTGTGCTGCTTTTGCCCTGCTCCTTTTAAGCAATTCCTTGAGTATGTCGTCAACATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATTTCCTTGTTTGATGGTGTGATCGGACCCAATCCAGCATTGCGGCCAATTAATACTGATGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGATTAGGGGTTCCTGCTACGCAATGGATTTCAGTTTACAATGCTAGACTGCCAATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTATCCCAGCATGTTGATAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGTCTTCCTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTATCGCCTTTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGATAAGAACTATTACATTACTTCTATTGCAGGGGCCAACAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACTCAACAATCATACAAAGTAAGTGACTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCAGGTCACATCAATGGCTACTGCTGGAAGTCGCTGGGGTATTGTTATGTCTCGCAATGCCGGATTTAGTAATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGGCATCCATAG 1812 0.4514 MPELRSGVRRGRAAAVGQKDSEPAKRNVKTRAAVPAAEKGRPRTRLAAKKLEREKPPIPTPEPVSDKERAKNKKEGAGVMGDESGGLSANKGASPEEDANTPPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRERASGPGAMEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQTMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATPQEKKLFLVDLGLATKWKDSSTGLHVEYDQRPDIGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPEILCCFCPAPFKQFLEYVVNMKFDEEPNYSKLISLFDGVIGPNPALRPINTDGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLSQHVDRGIADGLLISCVSSCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWDKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFQVTSMATAGSRWGIVMSRNAGFSNQVVELDFLYPSEGHP 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi589g00012 603 MobiDBLite consensus disorder prediction 36 78 - -
Sebi589g00012 603 ProSitePatterns Protein kinases ATP-binding region signature. 122 149 IPR017441 GO:0005524
Sebi589g00012 603 Pfam Protein kinase domain 116 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi589g00012 603 SUPERFAMILY Protein kinase-like (PK-like) 116 394 IPR011009 -
Sebi589g00012 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Sebi589g00012 603 ProSiteProfiles Protein kinase domain profile. 116 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi589g00012 603 SMART serkin_6 116 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi589g00012 603 Gene3D Transferase(Phosphotransferase) domain 1 89 428 - -
Sebi589g00012 603 FunFam casein kinase 1-like protein HD16 89 427 - -
Sebi589g00012 603 MobiDBLite consensus disorder prediction 1 110 - -
Sebi589g00012 603 CDD STKc_CK1 116 384 - -
Sebi589g00012 603 PANTHER CASEIN KINASE-RELATED 116 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi589g00012 Sebi-Chr589 97132 101852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi589g00012 110 342 AGC Kinase Gene Family AT3G08730 22.128 2.80e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Sebi589g00012 Pkinase 2.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi589g00012 - - gmx:100807373 1046.96