Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi589g00011 ATGGCGTCGACATCTTGTGTCAGTAAGAGCCCATTACCCATGACAGAGGCAGCTTCCAGCTCTAGTGTATATCCTCCTCCTGTAGCAAAATATGAAGAGGTTGTATCCAATTCCAAGCTCTTCATGTTTACCTTGGAGAAACTCCACGCTGCTATGGGGCTCAACACTTTAAAGGGTGATGAGTTGGATGGAAAATACGCTTTGAGTAAACTTGTGCCTTGGATTCCCATTATTGGGGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGGAAAAATAATTAGAGAAAGAAAATGGAAAGACGTAACTTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTATTATGCTTCATTGCTCTTCCATTATGAACAGATTTACTTTTTTAAAGCCCGTGAATGGAACCCTAACACTTCTGATGCTTTGCAGAGTCAATCAGCCATGCAAGTTCCTGTTCCAAAGATGCAGATTTTGCAGCCTTCACCAGAAATTCAACCAGCTGTCTCTCAACAGTCAAATGTTAATGCTACTAAATTGCCTGAAGCAACGGCCACGTCTTCAGCAGGGTCTCAAGTCATGGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACCGTCACAATAGGCACGGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAAAACCCTGTATTGCCAGCATCCCATCACAGTGGTTTGGCTAGTAACAACAATGCGTCTACTTCATTGGGTGTCCATCGTCGCCGACGCAGGAAGAAATCCGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCACGCAAGGCTAAAGCCACTTCACCAAGGAAAGGACAGGGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCGGAAAAGGCAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGATATAGAGCGGAAATGGAGGATTATCGCGAGAAACTGAAGATGGGCCAAGTTATCAGTGATGCTGTCCCACTTCAACAACGACTTCCTGACCCAGATGTAGAGATGCTGGATGCTGACATAAAATTGGATGAAGTTGAGGGGGATTCTCTTCAAACTCCAGAGGAGAGCAGTTCTGGTGAAAGTGACTATGAAGATGATAAAGCTATGGAGAAAGATTTTGATATGGATGCATTGCCTGTTATGGGGGTGGGTGCGGAAACTAGCTGTTTGGGTTCAGAAGAGAAGTCATCCAAGGAGGGTTTATGA 1326 0.4329 MASTSCVSKSPLPMTEAASSSSVYPPPVAKYEEVVSNSKLFMFTLEKLHAAMGLNTLKGDELDGKYALSKLVPWIPIIGGRELDLHRLFVEVTSRGGIGKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLFHYEQIYFFKAREWNPNTSDALQSQSAMQVPVPKMQILQPSPEIQPAVSQQSNVNATKLPEATATSSAGSQVMGVIDGKFESGYLVTVTIGTEKLKGVLYQAPQNPVLPASHHSGLASNNNASTSLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQGKDREISRMIGELWNKLKESEKAVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPDPDVEMLDADIKLDEVEGDSLQTPEESSSGESDYEDDKAMEKDFDMDALPVMGVGAETSCLGSEEKSSKEGL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi589g00011 441 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 397 - -
Sebi589g00011 441 PRINTS High mobility group (HMG1/HMG2) protein signature 333 353 - -
Sebi589g00011 441 PRINTS High mobility group (HMG1/HMG2) protein signature 314 333 - -
Sebi589g00011 441 FunFam High mobility group B protein 15 264 359 - -
Sebi589g00011 441 MobiDBLite consensus disorder prediction 1 22 - -
Sebi589g00011 441 CDD HMG-box_AtHMGB9-like 282 348 - -
Sebi589g00011 441 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 282 349 IPR009071 -
Sebi589g00011 441 MobiDBLite consensus disorder prediction 262 276 - -
Sebi589g00011 441 SUPERFAMILY HMG-box 270 353 IPR036910 -
Sebi589g00011 441 MobiDBLite consensus disorder prediction 245 261 - -
Sebi589g00011 441 Coils Coil 331 351 - -
Sebi589g00011 441 SMART bright_3 36 144 IPR001606 GO:0003677
Sebi589g00011 441 MobiDBLite consensus disorder prediction 1 24 - -
Sebi589g00011 441 Gene3D High mobility group box domain 266 360 IPR036910 -
Sebi589g00011 441 CDD ARID_HMGB9-like 37 139 IPR045303 GO:0003677
Sebi589g00011 441 MobiDBLite consensus disorder prediction 383 413 - -
Sebi589g00011 441 SUPERFAMILY ARID-like 33 145 IPR036431 GO:0003677
Sebi589g00011 441 Gene3D - 30 161 IPR036431 GO:0003677
Sebi589g00011 441 ProSiteProfiles ARID domain profile. 35 143 IPR001606 GO:0003677
Sebi589g00011 441 Pfam ARID/BRIGHT DNA binding domain 39 139 IPR001606 GO:0003677
Sebi589g00011 441 SMART hmgende2 281 350 IPR009071 -
Sebi589g00011 441 MobiDBLite consensus disorder prediction 245 289 - -
Sebi589g00011 441 SMART ARID_2 32 139 - -
Sebi589g00011 441 Pfam HMG (high mobility group) box 282 349 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi589g00011 Sebi-Chr589 77681 81590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi589g00011 1 416 ARID Transcription Factor Family AT1G04880 56.206 5.61e-132 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi589g00011 ARID 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi589g00011 - - gmx:100783284 662.914