Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00052 CCATCCCACAAGACGTTCAGGATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGACCCATCCCTTACTGGATCCGTATGAGGACCGACAACACCATTAGGTTAGGTATAATGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGATTTTAAGGTGGATGAAGAACAACCTCCACCATTCTAG 189 0.5079 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRLGIMLSAGTGAAPSSDFKVDEEQPPPF 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00052 62 SUPERFAMILY Ribosomal protein L39e 2 36 IPR023626 -
Sebi588g00052 62 Pfam Ribosomal L39 protein 8 35 IPR000077 GO:0003735|GO:0005840|GO:0006412
Sebi588g00052 62 Gene3D Ribosomal protein L39e 1 37 IPR023626 -
Sebi588g00052 62 PANTHER RIBOSOMAL PROTEIN L39E 1 35 - -
Sebi588g00052 62 FunFam 60S ribosomal protein-like L39 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00052 Sebi-Chr588 653912 654186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00052 1 35 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 85.714 5.72e-17 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00052 K02924 - gmx:100801450 77.4109