Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00051 ATGGCCTCTGACATATCATTTGAAGACCTCAAGAACGAGAATGTGGATCTTGAAAACATTCCTGTTGAGGAAGTTTTTAAGCAACTAAAATGTACCAGGGAGGGTCTAACAACAACTGAGGGAGAGAACAGGCTCCAAATTTTTGGGCCTAATAAGCTAGAGGAGAAAACAGAGAGCAAGTTCCTTAAATTCTTGGGTTTTATGTGGAATCCACTATCATGGGTTATGGAGGCTGCTGCTGTCATGGCCATTGCATTGGCCAATGGAGGGGGCAAACCACCAGATTGGCAAGATTTTGTTGGTATTGTTGTATTGCTCATCATCAACTCTACCATTAGTTTCATTGAAGAAAACAATGCAGGCAATGCTGCAGCAGCTTTAATGGCAGGAGATTTGATCAGCATCAAGTTGGGAGATATTGTCCCAGCTGATGCACGTCTCTTGGAGGGAGATCCCCTTAAGATTGACCAATCTGCCCTTACTGGTGAGTCCTTGCCAGTCACTAAGCACCCTGGTCAAGAGGTCTTCTCTGGTTCCACTTGCAAACAAGGTGAGTTAGAGGCTATTGTCATTGCCACTGGTGTCCACACCTTCTTTGGTAAGGCTGCACATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAAATGGTGTTGACATCTATTGGAAACTTCTGTATTTGCTCTATTGCTGTGGGCATGTTGATTGAGATCATTGTGATGTACCCCATCCAACAAAGGGCATACAGAGATGGAATTGACAACTTGTTGGTTCTTCTCATTGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTGACCATGGCTATTGGGTCTCACCGTTTGTCTGAGCAAGGAGCCATCACCAAGAGGATGACAGCCATTGAAGAAATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTTACCCTTAACAAGCTTACTGTGGACAAGAGCATGATTGAGGTGTTCGTCCAAGGTATGGACAAGGACACCCTTGTCTTATATGCTGCTAGGGCTTCTAGGGTTGAAAACCAGGATGCTATTGATGCTTCAATTGTTGGGATGCTGGGCGACCCCAAAGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCTTTCAATCCTGTGGATAAGCGCACAGCTATTACCTACATTGATGGTAAAGGCAACTGGCATAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTTTGTGGCCTTAAGGGAGAGACTTTGAAAAAGGCCCATGAGATCATTGATCAGTTTGCTAATCGTGGTCTACGTTCATTGGGTGTTGGACGCCAGACTGTTTCAGAAAAGACTAAGGAAAGTGCAGGAGACTCATGGGAGTTTTTGGGTCTCTTGCCCCTCTTTGACCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGGAAAGAAACTGGTCGCAGGCTTGGAATGGGCACCAATATGTATCCTTCATCCTCCCTTCTTGGTGAGAACAAGGACCCTGCCATTGCATCAATCCCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGATTGCAAGAGAGAAAACACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCTCCAGCATTGAAAAAGGCAGACATTGGTATTGCTGTGGCTGATGCAACTGATGCTGCAAGAAGTGCCTCAGACATTGTTTTGACAGAGCCAGGACTAAGTGTTATTGTGAGTGCTGTGTTAACTAGCAGGGCCATCTTCCAGAGGATGAAGAACTACACAATATATGCTGTTTCCATCACTATCCGTATTGTGTTTGGGTTCATGCTTGTAGCTTTAATCTGGAAGTTTGACTTCTCACCTTTCATGGTCCTTATCATTGCCATCTTGAATGATGGAACCATCATGACCATCTCTAAGGACAGGGTGAAACCTTCTCCATTACCTGACTCATGGAAGCTTAAAGAAATCTTTGCTACTGGAGTTGTTCTTGGAGCTTACATGGCCATCATAACTGTGGTGTTCTTCTATTTAGTTCATGACACTGATTTCTTCACCAGAGTTTTTGGTGTCAACTCAATTGCAGACAGTGAGGAGCAACTTAACTCAGCTCTTTACCTTCAAGTGGCCACTATCATTGCTGCATATGCACACTGGGACTTTGCTAGAATCAATGGAATTGGTTGGGGATGGGCTGGAGTAATCTGGATCTTTAGCATTGTTACCTACATTCCTCTTGATATCCTTAAGTTCCTCATCCGCTTGGGATTGTCAGGCAGGGCTTGGGACAACATGCTTGAGAACAAGACTGCTTTCACAACAAAGAAGGACTATGGAAAGGGAGAAAGGGAGGCTCAATGGGCTTTGGCTCAACGCACACTTCATGGTCTCCAAGTTACAGAATCCCATAGGGGCAACCACCATGAACAATCTGAAATTGCTGAGCAAGCTAAGAGGCGTGCTGAGGCTGCCAGGCTCAAAGAGCTCCACACACTCAAGGGACATGTTGAGTCTGTGGTGAAATTGAAGGGTCTTGACATTGATACCATCCAACAACACTACACACTCTAA 2664 0.4527 MASDISFEDLKNENVDLENIPVEEVFKQLKCTREGLTTTEGENRLQIFGPNKLEEKTESKFLKFLGFMWNPLSWVMEAAAVMAIALANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKHPGQEVFSGSTCKQGELEAIVIATGVHTFFGKAAHLVDSTNNVGHFQMVLTSIGNFCICSIAVGMLIEIIVMYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVQGMDKDTLVLYAARASRVENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDGKGNWHRSSKGAPEQIIELCGLKGETLKKAHEIIDQFANRGLRSLGVGRQTVSEKTKESAGDSWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDPAIASIPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGAYMAIITVVFFYLVHDTDFFTRVFGVNSIADSEEQLNSALYLQVATIIAAYAHWDFARINGIGWGWAGVIWIFSIVTYIPLDILKFLIRLGLSGRAWDNMLENKTAFTTKKDYGKGEREAQWALAQRTLHGLQVTESHRGNHHEQSEIAEQAKRRAEAARLKELHTLKGHVESVVKLKGLDIDTIQQHYTL 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00051 887 NCBIfam plasma-membrane proton-efflux P-type ATPase 124 743 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi588g00051 887 SUPERFAMILY Calcium ATPase, transduction domain A 124 206 IPR008250 -
Sebi588g00051 887 SFLD p-type atpase 288 617 IPR044492 -
Sebi588g00051 887 Gene3D - 130 193 - -
Sebi588g00051 887 PRINTS P-type cation-transporting ATPase superfamily signature 460 471 - -
Sebi588g00051 887 PRINTS P-type cation-transporting ATPase superfamily signature 156 170 - -
Sebi588g00051 887 PRINTS P-type cation-transporting ATPase superfamily signature 588 600 - -
Sebi588g00051 887 PRINTS P-type cation-transporting ATPase superfamily signature 482 492 - -
Sebi588g00051 887 PRINTS P-type cation-transporting ATPase superfamily signature 565 584 - -
Sebi588g00051 887 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Sebi588g00051 887 ProSitePatterns E1-E2 ATPases phosphorylation site. 308 314 IPR018303 -
Sebi588g00051 887 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Sebi588g00051 887 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 786 IPR023298 -
Sebi588g00051 887 PANTHER CALCIUM-TRANSPORTING ATPASE 18 824 - -
Sebi588g00051 887 Gene3D - 303 602 IPR023214 -
Sebi588g00051 887 PRINTS H+-transporting ATPase (proton pump) signature 596 621 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi588g00051 887 PRINTS H+-transporting ATPase (proton pump) signature 422 440 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi588g00051 887 PRINTS H+-transporting ATPase (proton pump) signature 537 553 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi588g00051 887 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi588g00051 887 SUPERFAMILY HAD-like 302 612 IPR036412 -
Sebi588g00051 887 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Sebi588g00051 887 FunFam Plasma membrane ATPase 115 193 - -
Sebi588g00051 887 Gene3D - 67 129 - -
Sebi588g00051 887 Pfam haloacid dehalogenase-like hydrolase 302 579 - -
Sebi588g00051 887 Pfam E1-E2 ATPase 124 285 - -
Sebi588g00051 887 Gene3D - 836 887 - -
Sebi588g00051 887 Gene3D - 318 465 IPR023299 GO:0000166
Sebi588g00051 887 SFLD C1.7: P-type atpase like 288 617 - -
Sebi588g00051 887 CDD P-type_ATPase_H 35 782 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi588g00051 887 NCBIfam HAD-IC family P-type ATPase 109 336 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi588g00051 887 NCBIfam HAD-IC family P-type ATPase 540 651 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi588g00051 887 FunFam Plasma membrane ATPase 457 613 - -
Sebi588g00051 887 FunFam Plasma membrane ATPase 318 465 - -
Sebi588g00051 887 Gene3D - 194 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00051 Sebi-Chr588 645365 650418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00051 1 887 Primary Pumps ATPases AT3G42640 79.219 0.0 1524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00051 K01535 - qsa:O6P43_003022 1480.31