Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00049 ATGCCTTCGAATTCATCGTTGTCCCAGAAATCAAAGGCGGTGGTGGGTGGGGACTTGGGAAGATCGGAAGTTGGAGGAGATTGGGGATTTGGATTGGGATTGGGATCGGTGGTGAGAGGGTGGGACGAGGGAGGCGTTTACTACAGCGACCAAGCGCATTCCTGGGATGACGGCCGCGGTGAAGCCGAAGCCGCCGCCTCCAACCATTCCCTCCTTCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACTAGTAACAATGTCTTCCCTTACAGAGAGAGCCTCCTCAACAACCCCAAGTTCCTTCTCATTGACATGGAAGATCTCGACTCCTTCGATCCTGATCTTCCAGCCAGACTCCGTTCTTCCCCCGCCGATTTCTTGCCCCTGTTTGAGACGGCGGCAGCACAGGTTCTGGTCAGTTTGAAGACCAAGGTGGCCGGTGATACTGGAGAAATGGAGGATCCGGCGACGGGGGATGTTCAGGTTCTCCTCACCTCCAAAGAGGATCCAGTTTCGATGAGATCGCTCGGGGCTCAATACATATCTAAGCTTGTGAAAATTGCTGGGATTACTATTGCCGCGTCCAGGACTAAGGCAAAAGCAACTTATGTCACCCTGATATGTAAGAACTGCAAGAAGGGGAAGCAAGTTCCATGTCGGCCAGGACTTGGTGGAGCAATTGTTCCTCGTTCCTGCGATCATATTCCTCAGCCCGGAGAAGAACCTTGCCCGATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAACTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACCTACTTCTCTCTGTTGATCGTCATCTTGTTCAAACAGTAGTGCCTGGCTCAAGATTGACAATCGTTGGAATCTATAGTATCTACCAGGCTTCCAACTCTTCTCAATCCCAAAAAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAGCAAATGAGGCCAAGTCTCGAGGTCCAGCTGCATTTACACCAGAAGAGATAGAAGAATTCAAAAAATTTGCTGCTGAACCTGATGCATATAAGAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGATGATGTCAAAAAGGCCGTGGCTTGTCTTCTTTTTGGAGGGTCGAGAAAGAATTTGCCTGATGGAGTCAAATTAAGAGGTGATATCAATGTGTTGCTTCTGGGGGATCCATCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCAATTGCTGTCTATACTTCTGGAAAAGGCTCCTCAGCTGCTGGTCTCACAGCTTCTGTAATCCGAGATAGCAGCACTGTAAGTTCTGCACCTCCTATATTGTTTGTATTAGATGGAGGTGCCATGGTCTTGGCAGATGGAGGTGTTGTGTGCATTGATGAGTTTGACAAGATGAGGCCAGAAGATAGGGTTGCCATCCATGAAGCAATGGAACAGCAAACTATATCCATAGCCAAGGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAATATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATTGTGAAAGACATCAGAATGTACAGTCAAGACAAGATTATAGCTAGTCATATCATAAAGGTTCATGCATCAGCTGCTACAACGATGGGTGAGAGCAAGGTTTCCAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAGCTGAATGTCACCCTCGTCTATCAGAATCTGCAGCAACATTACTGCAAAATAATTATGTGAAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACCGGGGAGGCTGCTGCAATACCAATTACCGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAATTATCTCATCTTGCTACTGAGGAGAATGTGCAAGAAGCTATAAGGCTTTTCACTGTGTCTACGATGGATGCAGCTAGGTCAGGAATAAACCAACAAATAAATCTCACACCTGACATGGCAAATGAGATAAAGCAAGCAGAAACCCAGATAAAGAGAAGAATCGGGATTGGAAATCACATATCAGAAAGAAGGCTGATTGATGACCTCGGCAGAATGGGAATGAATGAATCTATTGTGAGAAGAGCTCTTCTAATCATGCACCAGAGAGATGAAGTAGAGTACAAGCGAGAAAGGCGTGTTGTATTTAGGAAAGCGTAA 2322 0.4526 MPSNSSLSQKSKAVVGGDLGRSEVGGDWGFGLGLGSVVRGWDEGGVYYSDQAHSWDDGRGEAEAAASNHSLLQKFKEFIRNFETSNNVFPYRESLLNNPKFLLIDMEDLDSFDPDLPARLRSSPADFLPLFETAAAQVLVSLKTKVAGDTGEMEDPATGDVQVLLTSKEDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIVGIYSIYQASNSSQSQKGAVAVRQPYIRVVGIEEANEAKSRGPAAFTPEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTVSSAPPILFVLDGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASAATTMGESKVSKEENWLKRYLQYCRAECHPRLSESAATLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAIRLFTVSTMDAARSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLGRMGMNESIVRRALLIMHQRDEVEYKRERRVVFRKA 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00049 773 Pfam MCM OB domain 174 309 IPR033762 -
Sebi588g00049 773 SUPERFAMILY Nucleic acid-binding proteins 74 331 IPR012340 -
Sebi588g00049 773 Gene3D - 67 153 - -
Sebi588g00049 773 Pfam MCM P-loop domain 353 581 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 683 700 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 325 337 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 607 622 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 201 213 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 175 190 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi588g00049 773 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 66 726 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 SMART mcm 170 690 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 FunFam DNA helicase 346 703 - -
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 406 421 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 524 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 551 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 500 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 486 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 ProSiteProfiles MCM family domain profile. 365 577 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi588g00049 773 FunFam DNA helicase 201 259 - -
Sebi588g00049 773 Gene3D - 346 707 IPR027417 -
Sebi588g00049 773 Gene3D - 201 259 - -
Sebi588g00049 773 Gene3D - 174 309 IPR012340 -
Sebi588g00049 773 Pfam MCM N-terminal domain 73 162 IPR027925 -
Sebi588g00049 773 ProSitePatterns MCM family signature. 480 488 IPR018525 GO:0003677|GO:0005524|GO:0006260
Sebi588g00049 773 FunFam DNA helicase 66 154 - -
Sebi588g00049 773 CDD MCM5 368 688 - -
Sebi588g00049 773 Pfam MCM AAA-lid domain 599 688 IPR041562 -
Sebi588g00049 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 689 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00049 Sebi-Chr588 633433 639330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00049 40 773 Core DNA Replication Machinery Family AT2G07690 78.065 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00049 K02209 - gmx:100779483 1295.41