Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00048 ATGCCCCATGCCTTTCTTCCTCCCTTGACGCCTTCTTCCACTCATGACATCAAGACCCACATGAGAAAGAGAGGAGAATGTTCTTCTAGTGAAGCAAATCTACCAAAAAGCATCAATAGTCTTGAACATATGCTTGATGCTAAGGTATACTCAGTTGAAGACAAGGAACTGCAATCTTTTGTGACCACTCCCGTGATTAATATATATCCTTATGGCTCAACTGCAAATGGGGAAAATAGCTTGAACTCGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTAGTAGGAGTATAGAAGATCATCAGAAACGGATGAACACAAAGAAACTTCTGAGCCGGATACATGACAATGTGGTCTTCTGTCTGGGGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGCCGTATTCTTCTAAGCGGTGATCATTCTGAGAGGCATGAACTAGTGGAGGCAGAAGGAAATTCAAGTGATGAGTCTGTGTGTAATAAATATCTTGCTCAGGCAGCTGAACTATTTAATTCACAATGTAAGATAGGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAACAAAGCTTTTGCGCCTCATTGGGATACTGTCCAACTTTAGGTTGCAACAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATTCATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATTCTGGGCTGAAGAGTATGTCACGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGCTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTCCCAGAAACTGTTGCTAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATACGAAGGAATTAGACATAATTAATGGTTTTGAGAGAGATGAATCCCGGATGAATATGGAAATTACTGTGCGAACATCCAATGAGACTTACATCACCCCTGAGGAAAGAATATTCAGAGTTGAGTCATCTGGTGCTTCTGTCAGTTCGGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTCGACCCCAAGCCAAGTTTTTACTACTTTGATGATTTAGGGGGGATTGTCTGCCACATTACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTACACCACAGCTGTCTATGGAAGCTTCAAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTCTATAAATTAGGTGCTTTAAGTGATTGTCTCTTGCCAGAGCAAGATGCAGAGCCAGAGGAGCAGATTTTGGGTTCTTCAGATTCAGATGAGTGTGAAGAGGCCATTTCAAGAGGAGAATTACATGAGATGCTTGTTCCTTCTGCCTTTGGTCATTCATGGATAAATGAGAAAATTGTCCATCTCAACTCTTACTACATTAAATTTTGTCCCTGTCCAGAGGATAGGGACTACAGAAGGTTTGGTCTATTCATCATGACTCGTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTACATCTTGCTCACGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTTGCTTCTGAGTTTGTAGACTTGGCTAAGGTTGCTGAAACTCACACAAGCACGTCAACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGATAATATCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCAGATACTGTGGACAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGAAGCTCTTTTATTTTGTCACTAATGTTATCTATGAAAAGAATGGATTCAGTTCTTATAAAGATTCAGGCACTTCAAGATATGTGGACCACTTCCTTGAAAAGTTTTCCATTCATCTCAAATGCCCTGAACAACCACTTCTGCATGTAAAACCACTCTTCAATTTGCACAACCTACTACACAACCGGAAGCATGAGGATACAGAACCACATGAGCTGGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGTGAACTGAAAATAGTAGGCTTTTCGAAGGATATTGGTAGTTCCATATCTTTACTACCCTCAGTTATGCATCGTCTTGGAAACTTGCTGATTGCCATTGAACTCAAGCAAATGCTATCTTCTTTCTTCCCAGAGGCAGCTGAAATTAATGCCCTCAAAGTCCTAGAGGCTCTTACCACTGAAAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCTCGTCATTTTTTTCTCATGCATGACAACCTTCATGAAGGCGACCTTACGAGAAGACGTTCCAATGTTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAGGCGCAAGTTGCAGGTCTATATATGCGATCAGGCATTTGATCCTTTGCAGTTCTATGCATTAGGACGTCCTTGCCCGAGAGTTTGTAGCAAGGAAACTGAAGAAAGCATACACTTTTGTTTAATTTCTGATAAGGAACAAGGAAGAGCAACTGAAATCCGTTGTAATAAAAATCACCATTGGTTACATAGGAAAACAATTTCTGATGTTGTTGAAGCTCTGATCGGAGCATTCATAGTTGATAGTGGCTTTAAAGCTGCAATTGCCTTTCTTAAATGGCTAGGCATAGAAGTTGATTTCGAAGCGTCACAAGTTGTTAACATTTGCAGAGGAAGTGCTAGCTATTTTCCTCTTTCTGCTGATGTAGACATTCCATCCCTTGAACGTAAGTTAGGACATCACTTTGTTCATAAGGGTCTACTTCTCCAGGCATTTGTACATCCTTCTTACGGTAAGCATGGAGGAGGCTGTTATCAGCGGTTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTGTACTCAGCTTATCCGAAACTAAAACCTGGTCAATTAACAGATTTGCGATCATTGTCTGTTAATAACAAGGCATTTGCCTGTGTAGCAGTGGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGCGGCCTGTCTGAGGCAATAAAAAAATATGTGGACTATATTAGAAGACCTGTATCACGCAGAGGCAATAATGAAGAGCCAAAATGTCCCAAGGCCCTGGGTGACTTAGTGGAATCTTGTGTCGGTGCCATTCTTCTTGATTCAGGATTCAATTTGAACAAAGTTTGGAAGATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCCTCGAGCTTGCAGCTTAGTCCAATTAGGGATTTGCAAGAACTTTGCCAATCTCACAATTTGGATTTGCTGTTTCTGCCATCAAAACTTACTAAAACTTTTTCTGTTGAAGCCAAAGTGACTGGGAATGGTATATGTGAGACAGCTTTCGGAATCAGTCAAAATAAAAAAGAGGCTTCTAGAATTGCTTCACAGAAAATATTTTCAAACTTAAAGGCTCAAGGCTGGAAACCAAAGTCAAAAACTTTGGAAGATGTTCTGAAATCAACATTTAAGATGGAACCAGAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAACACAATTGGACAAGCAATGGTTAATGGAAACCTATACAGCAAGTCTGACCCAGAAATTCGCCCTATCCGAGAGGTAGTTGGTATGTGCTCCCCATGTGTGAAACCTGTTGATCAACACCTTCAATCTTCTCCTAAGGGAAAGCTTAGTGAAACTTTTGAAAATCATGATTGTAGTAGTGACTCATCGAGGACAGGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGACGGACCAGACCACCTGAAGTTATTCACTTTCAAGGTGACCTTGGAGATAGAAGAGGTCCCAGATACGATTTTTGAGTTTATTGGGGAACCCCAATCAAAGAAGAAAGATGCTGCTGAGAGTGCGGCTGAGGGTGTATTTTGGTTCCTGGAAAAGGAAGGGTACCTGGTTAATGCTAATGGTTAA 4326 0.402 MPHAFLPPLTPSSTHDIKTHMRKRGECSSSEANLPKSINSLEHMLDAKVYSVEDKELQSFVTTPVINIYPYGSTANGENSLNSKIEEIKRQCIATLSRSIEDHQKRMNTKKLLSRIHDNVVFCLGNLGIWGALQASRILLSGDHSERHELVEAEGNSSDESVCNKYLAQAAELFNSQCKIGDSVSDPSSVEILKEPFFSTKLLRLIGILSNFRLQQNMKCIIFVNRIVTARSLSFILQKLKLLRQWRSDFLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNTKELDIINGFERDESRMNMEITVRTSNETYITPEERIFRVESSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFYYFDDLGGIVCHITLPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKLGALSDCLLPEQDAEPEEQILGSSDSDECEEAISRGELHEMLVPSAFGHSWINEKIVHLNSYYIKFCPCPEDRDYRRFGLFIMTRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFASEFVDLAKVAETHTSTSTFYLLLPVILQEYDNIMKVDWKTVKRCLCSPIFRHPADTVDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKLFYFVTNVIYEKNGFSSYKDSGTSRYVDHFLEKFSIHLKCPEQPLLHVKPLFNLHNLLHNRKHEDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSVMHRLGNLLIAIELKQMLSSFFPEAAEINALKVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDNLHEGDLTRRRSNVVNNSNLFKLAIRRKLQVYICDQAFDPLQFYALGRPCPRVCSKETEESIHFCLISDKEQGRATEIRCNKNHHWLHRKTISDVVEALIGAFIVDSGFKAAIAFLKWLGIEVDFEASQVVNICRGSASYFPLSADVDIPSLERKLGHHFVHKGLLLQAFVHPSYGKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSRRGNNEEPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDLLFLPSKLTKTFSVEAKVTGNGICETAFGISQNKKEASRIASQKIFSNLKAQGWKPKSKTLEDVLKSTFKMEPELIGYDETPIDVTDTNTIGQAMVNGNLYSKSDPEIRPIREVVGMCSPCVKPVDQHLQSSPKGKLSETFENHDCSSDSSRTGTARSRLYELCAAYCWKPPTFECCKEDGPDHLKLFTFKVTLEIEEVPDTIFEFIGEPQSKKKDAAESAAEGVFWFLEKEGYLVNANG 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00048 1441 SMART riboneu5 825 995 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 SMART riboneu5 1030 1182 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 FunFam Endoribonuclease dicer-like 1 1010 1180 - -
Sebi588g00048 1441 Gene3D - 1179 1256 - -
Sebi588g00048 1441 PANTHER DICER-RELATED 19 1257 - -
Sebi588g00048 1441 Pfam PAZ domain 678 799 IPR003100 GO:0005515
Sebi588g00048 1441 ProSiteProfiles Ribonuclease III family domain profile. 1015 1159 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 201 362 IPR001650 -
Sebi588g00048 1441 SMART PAZ_2_a_3 656 804 IPR003100 GO:0005515
Sebi588g00048 1441 Gene3D Ribonuclease III domain 822 985 IPR036389 GO:0004525|GO:0006396
Sebi588g00048 1441 Gene3D Ribonuclease III domain 1011 1178 IPR036389 GO:0004525|GO:0006396
Sebi588g00048 1441 Gene3D - 1363 1433 - -
Sebi588g00048 1441 Gene3D paz domain 673 776 - -
Sebi588g00048 1441 SMART DRBM_3 1187 1251 IPR014720 -
Sebi588g00048 1441 SMART DRBM_3 1357 1427 IPR014720 -
Sebi588g00048 1441 Pfam Dicer dimerisation domain 385 469 - -
Sebi588g00048 1441 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1356 1432 IPR014720 -
Sebi588g00048 1441 CDD RIBOc 1031 1181 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 ProSitePatterns Ribonuclease III family signature. 1050 1058 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 SUPERFAMILY RNase III domain-like 827 989 IPR036389 GO:0004525|GO:0006396
Sebi588g00048 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 335 IPR027417 -
Sebi588g00048 1441 SUPERFAMILY dsRNA-binding domain-like 1141 1251 - -
Sebi588g00048 1441 SUPERFAMILY dsRNA-binding domain-like 1356 1434 - -
Sebi588g00048 1441 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1357 1431 - -
Sebi588g00048 1441 SUPERFAMILY PAZ domain 675 776 IPR036085 GO:0005515
Sebi588g00048 1441 Pfam Helicase conserved C-terminal domain 208 319 IPR001650 -
Sebi588g00048 1441 ProSiteProfiles PAZ domain profile. 678 778 IPR003100 GO:0005515
Sebi588g00048 1441 SMART helicmild6 231 321 IPR001650 -
Sebi588g00048 1441 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1186 1252 IPR014720 -
Sebi588g00048 1441 Gene3D - 194 356 IPR027417 -
Sebi588g00048 1441 FunFam Endoribonuclease dicer-like 1 380 476 - -
Sebi588g00048 1441 SUPERFAMILY RNase III domain-like 1014 1178 IPR036389 GO:0004525|GO:0006396
Sebi588g00048 1441 ProSiteProfiles Ribonuclease III family domain profile. 829 974 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 CDD DSRM_DCL_plant 1363 1432 - -
Sebi588g00048 1441 CDD RIBOc 828 985 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 MobiDBLite consensus disorder prediction 1333 1354 - -
Sebi588g00048 1441 FunFam Dicer-like 103 673 776 - -
Sebi588g00048 1441 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 385 475 IPR005034 GO:0016891
Sebi588g00048 1441 Gene3D Dicer dimerisation domain 381 477 IPR038248 -
Sebi588g00048 1441 FunFam Endoribonuclease dicer-like 1 192 355 - -
Sebi588g00048 1441 Pfam Ribonuclease III domain 1050 1159 IPR000999 GO:0004525|GO:0006396
Sebi588g00048 1441 Pfam Ribonuclease III domain 843 974 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00048 Sebi-Chr588 614903 629624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00048 219 318 Eukaryotic Initiation Factors Gene Family AT1G72730 31.000 7.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00048 K11592 - gmx:100818702 2383.99