Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00036 ATGGCTTTTCAAGACCATTTCCAAAACGAAATATCTTTCCAGCGTTTCACAGAGGAGCAGCAAGACATGCAACAACAGAGGCTGCCACCACCAACATGGCTCAACAACGCCACCAATCATCAACGACATCAGCAGAATTTCCTTCACTTGCAAGCGGAGACAACAACAGAGAAAAGCAATTGTGAATCGGATGAGTTAAGGGAATACAAAGGTGACATTTTGGGACACCCCCTTTATGATCAGCTCTTATCAGCTCATGTTTCGTGCTTGAGGATTGCAACCCCAGTGGACCAGCTTCCTAGAATCGATGCTCAGCTTCAACAGTCACAGCGTGTGGTGGAAAAGTACTCTCACTCTTCCTCCTCACTTGGAAATAATAATAATAATAGGGTGGTGGTAGATGAGAAGGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTGCTCTGTGCCTTCAAAGAGCAATTGCAGCAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCAAAGCTTGACAGCAAAAGGCATATTAACAACATTAATTATATATGATGCATATGAGCATGCAGGTGTATCTCCAGGCGAAGGAACAGGTGCAACAACGTCTGACGATGAAGATGAGCAAGCAGAGAGCAATGCCAATTTATACGAAGGAAGTTGCCTGGATGGTGCTGATAGTCTTGGCTTTGGCCCTCTTGTCCCCACTGAGACTGAACGCTCTTTGATGGAACGAGTCAGGCTTGAGTTAAAACAGGAGCTAAAACAGGGTTACAAGAATAAGATTGTGGACATAAGAGAAGAGATTCTACGAAAGAGAAGAGCTGGGAAGCTCCCCGGAGACACCACCTCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCTAGATTGGTCCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGCAGTGCAGGCGAAACCAGTAACCAGAGCTTCATGTGA 1101 0.4532 MAFQDHFQNEISFQRFTEEQQDMQQQRLPPPTWLNNATNHQRHQQNFLHLQAETTTEKSNCESDELREYKGDILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSHSSSSLGNNNNNRVVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTAKGILTTLIIYDAYEHAGVSPGEGTGATTSDDEDEQAESNANLYEGSCLDGADSLGFGPLVPTETERSLMERVRLELKQELKQGYKNKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKSKRKSSAGETSNQSFM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00036 366 SMART ELK_2 258 279 IPR005539 GO:0003677
Sebi588g00036 366 MobiDBLite consensus disorder prediction 335 366 - -
Sebi588g00036 366 Pfam KNOX2 domain 132 182 IPR005541 GO:0003677|GO:0005634
Sebi588g00036 366 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Sebi588g00036 366 ProSiteProfiles ELK domain profile. 258 278 IPR005539 GO:0003677
Sebi588g00036 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 352 - -
Sebi588g00036 366 SMART HOX_1 280 345 IPR001356 GO:0003677
Sebi588g00036 366 Coils Coil 257 277 - -
Sebi588g00036 366 Pfam ELK domain 258 279 IPR005539 GO:0003677
Sebi588g00036 366 SUPERFAMILY Homeodomain-like 280 345 IPR009057 -
Sebi588g00036 366 FunFam homeobox protein knotted-1-like 3 isoform X1 279 340 - -
Sebi588g00036 366 CDD homeodomain 281 342 IPR001356 GO:0003677
Sebi588g00036 366 SMART KNOX2_2 128 183 IPR005541 GO:0003677|GO:0005634
Sebi588g00036 366 Gene3D - 284 362 - -
Sebi588g00036 366 Pfam Homeobox KN domain 298 337 IPR008422 GO:0003677|GO:0006355
Sebi588g00036 366 ProSiteProfiles 'Homeobox' domain profile. 278 341 IPR001356 GO:0003677
Sebi588g00036 366 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00036 Sebi-Chr588 497272 502267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00036 57 363 Homeobox Transcription Factor Family AT5G11060 72.964 9.53e-157 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi588g00036 KNOX2 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00036 - - gmx:100803673 551.206