Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00031 ATGGGTTCCTCCTCTAGTCGACTTGCCTCTGCCTCTCGCTCTCGCCCTTCTACTTCCAGTCCCAACACCAGCAGGGTCAACCGATTCAGACTATCCTCCCTTCTTTGTGGCACCTCCACCTCTCGCTCGGTTTATCAGATGGAAGAACGTCCATCTGAGATTCAGGTTGATTCGGCAAGAGACTTCGATGGTGAAATTCAGAAAGTCACAGAGGAATCGTCTTTATCATGTACTGAAGCCAGAATTAACTGCTGTCCCCATACTGAAACTGCAACCTCGTCTGATATGAGATCTGAATTCTGTGGGAATACTACTGTTGAAGGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAACGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGACACAGTCATCATGAATCATATAGTGATAGTAGCAATACAGCTAGTACTTCATTTGTTGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATACTGTTGATGATCCAGTGGTTAGTGGTGTCCCTCAAATCTCTTGTGAGACAATGCATCCAAGGAGTTCAACCCCTCAAGAGCATGGAAATTCCAGTCCTGGTGAAATTTCTGTTGAGAATCACACTGGTCCATTCATATCTATCCAAAGTTCTTCTCCCAATCCTGTTCCTCAAGAGTCCCATATACCAACAACTTCTCCAGTGCCAGAAAATGAACCTCATCGCGAGACAATACCTTCAGGTTTAGGTATTATTGTGTCCAATCGGGAAAGAGGACAGGGAAATGATGGTGTGCTTCAACTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATAGTCTTCTCCACTGGAGGTGCTGATGATCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTAGTGATTTATCTAATGATGGGATTGGGGGTGCTTCTGGATATACGGGAAGTAGAATTCACAGATTGAATGATCGAATGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCCTTGACGAGATTGGTCGGTGGAATTCTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCAATGCCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCACCGGCAACCTGTATCACTTTCACTATCCATGGTCTCACTCCCTGCACCAGAATCAATTGTTGACTCCTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAGTGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAGATACGGGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGTGTGGATAAGTGGCTAAAGGAAATACACGGCGTTTGTCCTCTATGTCGTGGCAATGTTTGTGGAGGGTTCACTGAATCTTCTTCACACTCAGAAGTGCAGTCTCATCATTGA 1644 0.4519 MGSSSSRLASASRSRPSTSSPNTSRVNRFRLSSLLCGTSTSRSVYQMEERPSEIQVDSARDFDGEIQKVTEESSLSCTEARINCCPHTETATSSDMRSEFCGNTTVEGSSRNVATSSQRKCLSERKELVPPYQVSAGHSHHESYSDSSNTASTSFVEQQSSDPVSVNVSANKDAVNTVDDPVVSGVPQISCETMHPRSSTPQEHGNSSPGEISVENHTGPFISIQSSSPNPVPQESHIPTTSPVPENEPHRETIPSGLGIIVSNRERGQGNDGVLQLDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGSDLSNDGIGGASGYTGSRIHRLNDRMRHSRSEIWERLRGGLDEIGRWNSSCPLGLHADGMCSCESFPMPEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSSHSEVQSHH 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00031 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 531 IPR013083 -
Sebi588g00031 547 MobiDBLite consensus disorder prediction 191 247 - -
Sebi588g00031 547 SMART ring_2 485 526 IPR001841 -
Sebi588g00031 547 MobiDBLite consensus disorder prediction 138 165 - -
Sebi588g00031 547 MobiDBLite consensus disorder prediction 132 165 - -
Sebi588g00031 547 Pfam Ring finger domain 484 527 IPR001841 -
Sebi588g00031 547 SUPERFAMILY RING/U-box 474 530 - -
Sebi588g00031 547 FunFam Putative RING zinc finger domain superfamily protein 452 532 - -
Sebi588g00031 547 MobiDBLite consensus disorder prediction 1 25 - -
Sebi588g00031 547 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 545 - -
Sebi588g00031 547 ProSiteProfiles Zinc finger RING-type profile. 485 527 IPR001841 -
Sebi588g00031 547 MobiDBLite consensus disorder prediction 191 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00031 Sebi-Chr588 426184 430266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00031 394 531 C3H Transcription Factor Family AT5G45290 52.941 1.58e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00031 - - gmx:100783604 852.047