Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00030 ATGTGTGTGCAGGACGGTGAGCAAGTTGTTCAAGATATGGAGCAAGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATACCCAGATGGATAACAGGGAAAAAGGTTCTTCTTTTAGAACTCCCAGAGACCGGATCAGTGCTGAAAATTCGTTTCCTCTGGAAAGCATATGTGAGGATGCAGAGATTGCAGAGAAAAAACAGAACCTGATAAACTTTGTTCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGGTCGCCCTTACATGGAGGATACCCACATTTGCATTGGAGATTTGGCAGAGAAATTTGGTTATAATATACTCTATGAGGAAGCTATTTCCTTTTATGGTATTTCTCATTACACAATGAAAACTTATGCCTTGAAAATTTCCTCTCCTAGAAATGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTCCGTGATCATCTGCCAAGAGTGATTGTTGAGGATGCTGACTTTCCTTTAGAACTTGAGAAGGTGGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCCGGGCTGTTTTGTCCCGTTCTGGAGTGGCCATAGAAATGTCAAAAGATCACAGGCCCTTGTGCATCAAAGAAAGGATGAGGATTGAGTCCATGGGTGGATTCATTGATGATGGTTACTTGAATGGACAGTTAGGTGTCACTCGAGCTCTAGGTGATTGGCATCTTGAAGGAATGAAAGAAATGAGTGGAAATGGTGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCCGAAGCCAGAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAAACAGTGTTGCAAGGAAATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAATTTGACAGTTGTGATGGTATGCTTTCACTCAGATCCACCACCACCTATGGTTGTAGAAAGGCCTAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACCTGCTACAAGGATAG 1197 0.4269 MCVQDGEQVVQDMEQVDNRRVSWPLHCDLLHTQMDNREKGSSFRTPRDRISAENSFPLESICEDAEIAEKKQNLINFVPTLRSGEWSDIGGRPYMEDTHICIGDLAEKFGYNILYEEAISFYGISHYTMKTYALKISSPRNVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFAKTCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRSGVAIEMSKDHRPLCIKERMRIESMGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSGNGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFHSDPPPPMVVERPRVRRSISAEGLQNLKYLLQG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00030 398 PANTHER PROTEIN PHOSPHATASE 2C 69 363 IPR015655 GO:0004722|GO:0006470
Sebi588g00030 398 Gene3D - 63 368 IPR036457 -
Sebi588g00030 398 Pfam Protein phosphatase 2C 141 357 IPR001932 -
Sebi588g00030 398 SMART PP2C_4 72 363 IPR001932 -
Sebi588g00030 398 CDD PP2Cc 82 365 IPR001932 -
Sebi588g00030 398 FunFam Probable protein phosphatase 2C 22 65 368 - -
Sebi588g00030 398 ProSiteProfiles PPM-type phosphatase domain profile. 82 365 IPR001932 -
Sebi588g00030 398 SUPERFAMILY PP2C-like 73 366 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00030 Sebi-Chr588 397273 400034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00030 50 398 PP2C-type Phosphatase Gene Family AT2G25620 55.524 2.58e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Sebi588g00030 PP2C 3.4e-62 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00030 K14803 - gmx:100782648 643.654