Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00029 ATGGATAAAATTGCTTCTATTACTGATGGAGCCCTTCAGAACCGCTTCTGCTCTCACAGGATATTGTGTGGTCTGTGGAAAATGGGAAGTAATGCTACTGAAAAGATCCCTTGCAATAACAGCACTGAAAGTTCAGAAACCACTATTGAGATAAAGATTAAAACATTGGATTCACAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTTCCTGCTCTGAAAGAACAGATTGCTTCTTTAACTGGAGTGTTATCAGAACGGCAGCGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGACCAGCTTCTGTCTGCCTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACTGCCGGGAAGTTTGCCCAATCATTCAGTGACTGAACCAAATTCAAGCACAAGCCATGGTCATAGTAATCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAAGGCGAAGGAGTTCCTTCAGAAATCAATAGGATTGTTTCTGCTGTTCTAGGCTCTATCGGACTTCCAAATTTTGCAAGTGGTGGTGAAGGGATTATTGTCAGGGAGCATGATTCCCAAGGCTTAGGAAGAGTTTCAGGTTCTAGTGGAATATCAGATTCATCTCAGTCTCAACATGAAAGATCGCGTAATACCTTTGGACTTCCAGCAGCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCCGATTCTTTGACAACTTTGTCCCAATACCTAAGTCATATAAATCATGAATTTGATACAATTGTCAGAGAAGGGGGGAATGATGTCCAAGCAGCTGAGGCTCGTAGGAATGGAGAACTGGGATCTGTTTCTTCATGTTTGGGTTCAACAGCAGAAGGGCTTTCATCAACCGCATCCTTGGCAGGAGTGTTGCTTTCTACCAGACAAATGATCATTGAACGAGTTGGGGAGTGCCTACTTCAACTTGCAAGACAGCTGGAGAATCAAGCAGATGTAACTGATTCCTCGTTGCGATTAAACACTCAATCAAGGGCTTTGAGTACTGGAGTTTTATTTTATAACCTCGGTGCATTTTTACTTGAGCTTGGTCGCACAACAATGACATTGCGTTTGGGTCAAACACCGGCTGAAGCTGTAGTTAATGGTGGGCCTGCTGTTTTTATATCACCATCTGGTCCTAACCATATAATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTTCCTGTTGGAGCTTCACAATCTAACACAAGTGTAGGTAGCGTACTTGGCTCAAGTTTTTTCCCAAGGCGTATTGATATACAGATAAGACGAGGTACATCATCAACTACACCTGCTACCAATCAAGAAGAACGCAGTGATACACCATCTGCTCCAGTACAAAGAAATCCGGCGGAAAGTTCTGTTAATCAAGCAACCTCTAGGCGTCCAGATGCATCTATTGGTGGGGAGCCTGGAGTAAGGATAGTGCCAATTAGAACCATGGTTGCAGCAGTACCAGGTTCCTTAGGTCGTCCATCTTCAGAACCATCTGGTAACTCTGTAGGGCTTTACTATCCAGTTCTTGGGAGATTTCCACATGTATCTTCTGGGCATACAAATAATGAACAGGGTTCTGAACCAGCAAGTCAGCATCATGCTGCACAACGTTCAACTCCTGAGTCCACATTGCAAAGGCAAAGCATGGAAGATTCTGCAAGGAATGGAACCTCATCAACTTCAAACACAAGACAAGAGCAGTCAAATTCTCGTGTTGTAAATATCAATATTCTGGCAGCTGGTGGGTCCCAAAACAACCAAGAATCTGAGAGACAGATACCAAGTAGTGTACTTCAGTTTTTAAGGACACTCTTTCCTGGTGGAGAAATTCACGTGGAAGATTCAAGTTTACAAGGAACAACTGCAGGTTCTACCTCAGAGCATGCTACAACATCAATGGGTGCTGTCCAAGCGCAAGCCCCTGAAGCAGAACCCCGTGTTAGTGATGAAGGAATATTTTTGTCTAATATACTCCGTGAGATCATGCCTGTCATATCACAACAAGTAGGATCCGAGGGAAATTCTTCTGTAGATCAAATGGCTCAAGATTCATCGACCCAGGTTGAAACTGATGCTGGGACATCACGCAGACACAGTGGTTCTGAACCAAGCCCTCCAAATCCAAAACGTCAAAAGACTGAGAAGGCTTTTCTGAAGCAACCCAAAGTGTTTCTAAGCTCGAAGAAATCTGGGAAGGGAAAGAGGCCTGGAAAGGGTGGGAATCGCTTTTGGAAATCCATTGGACTTGGATTTAAGACTCCCAGGGAAGCCATTGAAGGAACCTATATTGACAAGAAATGCCCTTTCACTGGAACTGTTTCCATCCGGGGCCGTATCTTAGCTGGAACTTGTTACAGTGCTAAGATGACGAGGACTATAATTGTTAGGAGGAATTATCTTCACTTTATTAAGAAGTATCAGAGGCCACTCTCAAAGACAGTGAGGTTCAACGTGTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGGGCAAAGAAGGCATTTGCTGGAATGTGA 2580 0.4399 MDKIASITDGALQNRFCSHRILCGLWKMGSNATEKIPCNNSTESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASLTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPLPGSLPNHSVTEPNSSTSHGHSNQVAPGVFIETFNVPVQGEGVPSEINRIVSAVLGSIGLPNFASGGEGIIVREHDSQGLGRVSGSSGISDSSQSQHERSRNTFGLPAAVSLGSLQPPVIPDSLTTLSQYLSHINHEFDTIVREGGNDVQAAEARRNGELGSVSSCLGSTAEGLSSTASLAGVLLSTRQMIIERVGECLLQLARQLENQADVTDSSLRLNTQSRALSTGVLFYNLGAFLLELGRTTMTLRLGQTPAEAVVNGGPAVFISPSGPNHIMVQPLPFQPGASFGAVPVGASQSNTSVGSVLGSSFFPRRIDIQIRRGTSSTTPATNQEERSDTPSAPVQRNPAESSVNQATSRRPDASIGGEPGVRIVPIRTMVAAVPGSLGRPSSEPSGNSVGLYYPVLGRFPHVSSGHTNNEQGSEPASQHHAAQRSTPESTLQRQSMEDSARNGTSSTSNTRQEQSNSRVVNINILAAGGSQNNQESERQIPSSVLQFLRTLFPGGEIHVEDSSLQGTTAGSTSEHATTSMGAVQAQAPEAEPRVSDEGIFLSNILREIMPVISQQVGSEGNSSVDQMAQDSSTQVETDAGTSRRHSGSEPSPPNPKRQKTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCYSAKMTRTIIVRRNYLHFIKKYQRPLSKTVRFNVLKVIPAGSSSGAKKAFAGM 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00029 859 SUPERFAMILY Nucleic acid-binding proteins 798 847 IPR012340 -
Sebi588g00029 859 SMART ubq_7 49 120 IPR000626 GO:0005515
Sebi588g00029 859 MobiDBLite consensus disorder prediction 128 148 - -
Sebi588g00029 859 Gene3D - 41 136 - -
Sebi588g00029 859 FunFam Large proline-rich protein BAG6 41 134 - -
Sebi588g00029 859 Pfam Ubiquitin family 51 121 IPR000626 GO:0005515
Sebi588g00029 859 PRINTS Ubiquitin signature 80 100 IPR019956 -
Sebi588g00029 859 PRINTS Ubiquitin signature 59 79 IPR019956 -
Sebi588g00029 859 PRINTS Ubiquitin signature 101 122 IPR019956 -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 205 226 - -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 691 740 - -
Sebi588g00029 859 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 38 737 - -
Sebi588g00029 859 ProSiteProfiles Ubiquitin domain profile. 49 124 IPR000626 GO:0005515
Sebi588g00029 859 MobiDBLite consensus disorder prediction 445 486 - -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 443 495 - -
Sebi588g00029 859 Pfam Ribosomal_S17 N-terminal 734 802 IPR032440 -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 537 592 - -
Sebi588g00029 859 SUPERFAMILY Ubiquitin-like 43 128 IPR029071 -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 132 148 - -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 691 729 - -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 204 226 - -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 636 659 - -
Sebi588g00029 859 Gene3D - 830 859 - -
Sebi588g00029 859 MobiDBLite consensus disorder prediction 636 669 - -
Sebi588g00029 859 Gene3D - 729 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00029 Sebi-Chr588 362101 387106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00029 733 859 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 70.701 5.15e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi588g00029 K23390 - gmx:100783070 1069.3