Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi588g00015 ATGGGGAAGAAAAAGAAGCAAGCAGGAGAAACAAATGAAGATAGAGGAAATCAAAACAAAGTGGGAAATAGCAGCCCCAGAGCATATGACAATGACACTATGGTATTTATATCCATGTCTCAAGAGTTGAAGGATGAAGGGAACAAGTTGTTCCAAAAGAGGGACCTTGAAGGAGCTTTACTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCATATTGATGTGTCCTATCTGCGGAGTAATATGGCTTCATGTTACATGCAGATGGGACTCAGTGAGTATCCAAGGGCAATTCATGAATGCAATTTGGCCCTCGAAGTGACACCAAAATATAGCAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGAGATGTTAGCACTGTTGTGAAGATAGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAATGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTCAATGATACAATAATTGAGTTACCTCCAGATTATGTTGAACCACCTAATGCTTTACCTCCAGAAAAGGCCGAGGAGAAATTTGAAGAGAAGGCTGAGGACAGTATTCCAGTTGTAGAGAAGAAGACTTTAACATCCAAAAAGAAGAAGGCCAAGGAGAAATTTGATGAGAAGGATCCATTTTTTGAGAAACATAAAGTAAAGGAGGGGAAGATGGTTGGCATTAATAATGCACATGAGAATGGTTATGTCGGAAAAGCAAAGGAAATTACTAGTTCATCTTGCATTGAGGACTGGATAATTCAGTTTGCTAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGAATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTTCAAGAGATGACTGCCTTAGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTATATTTCACAGAAGATTCTTCTAAAGATCTACTATGTGAACAAATCAATAGTTCATATGAATGGGCACGGAAAGAATATGCAAAAGCAGGAGAAAAATATGAAGCAGCCATTGAACTTAAGTCAGATTTTTATGAAGGCTTCCTGGCACTAGGGCTGCAGCAATTTGAGCAAGCAAAACTTTCCTGGTATCATGCACTCAGTAATAATGTAGATTCAGCTACATGGCCTTCCACTGAGGTTCTTCAGCTTTACAACAACGCTGAGGATAATATGGAGAAAGGAATGCAAATATGGGAAAGATCAAAAGAGCAGCACTCTAGTAAAATCTCTAATTCAAAAGATGTTATATTACATGTGCAGAACATGGGGTTGGATGGCCTTTTTAAAAATATGTCCAGAAATGAAATTGCTGCACAGGAGGAAAATATGAGGTCTCAAATAAATCTCCAATGGGGTGCCATGCTATATGAACGCTCAAGTGCAGAATTCAAATTAGGGATACCAATATGGCATGAATCTCTAGAAGTTGCGGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGCTCTAGCGTTCAAAATTGATGAAATAGTACAGGCATGGAGTGAGATGTACAAAGCTAAAAAGTGGCAGAGTGGAATTCCATCATTTCCGACAACCATCAGTTGGGCTGCTTCTGTGCCTGAAATGCTATTGTCATCAGAAGGTAACTGA 1797 0.394 MGKKKKQAGETNEDRGNQNKVGNSSPRAYDNDTMVFISMSQELKDEGNKLFQKRDLEGALLKYEKALKLLPRNHIDVSYLRSNMASCYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVVKIEPNNVMALEISENVKNALEEKGLRVNDTIIELPPDYVEPPNALPPEKAEEKFEEKAEDSIPVVEKKTLTSKKKKAKEKFDEKDPFFEKHKVKEGKMVGINNAHENGYVGKAKEITSSSCIEDWIIQFAKLFKNHVGFESDRYLNFHELGMKLYSEALEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKDLLCEQINSSYEWARKEYAKAGEKYEAAIELKSDFYEGFLALGLQQFEQAKLSWYHALSNNVDSATWPSTEVLQLYNNAEDNMEKGMQIWERSKEQHSSKISNSKDVILHVQNMGLDGLFKNMSRNEIAAQEENMRSQINLQWGAMLYERSSAEFKLGIPIWHESLEVAVEKFELAGASPTDIAVMLKNHCSNNTAVDALAFKIDEIVQAWSEMYKAKKWQSGIPSFPTTISWAASVPEMLLSSEGN 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi588g00015 598 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Sebi588g00015 598 PANTHER PROTEIN CLMP1 223 581 IPR044517 -
Sebi588g00015 598 MobiDBLite consensus disorder prediction 1 29 - -
Sebi588g00015 598 Gene3D Tetratricopeptide repeat domain 38 169 IPR011990 GO:0005515
Sebi588g00015 598 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Sebi588g00015 598 SMART tpr_5 78 113 IPR019734 GO:0005515
Sebi588g00015 598 SMART tpr_5 114 147 IPR019734 GO:0005515
Sebi588g00015 598 SMART tpr_5 40 73 IPR019734 GO:0005515
Sebi588g00015 598 SUPERFAMILY TPR-like 40 153 IPR011990 GO:0005515
Sebi588g00015 598 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi588g00015 Sebi-Chr588 202650 204910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi588g00015 28 147 Calmodulin-binding Proteins AT3G25230 30.303 3.43e-08 54.7